Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00272 ATGGCTGACAAGGAAGAAGCCATGCATGCTGTTTTGAAGGAAGCTGTGGATTTGGAAAACGTGCCACTTGAAGAGGTTTTTCAGACTCTGAGGTGTGATTCAAATGGACTCACAACAAAATCTGCTGAGGAGAGATTGGCCATTTTTGGTCACAACAAACTTGAGGAGAAACAGGTCCTTCGGGATGGGAAATGGATTGAGGAGGATGCCAGTGTTCTTGTTCCAGGGGATATAGTTAGTGTTAAGCTAGGTGATATTATCCCTGCGGATGCTCGTTTACTTGAAGGTGATCCGTTGAAGATTGATCAGTCCGCACTTACTGGTGAGTCTCTTCCTGTCACAAAAGGCCCTGGTGATAGTGTTTATTCAGGCTCCACATGCAAGCAGGGAGAGATAAATGCAGTTGTTATAGCCACGGGAGTTCATACCTTCTTTGGCAAAGCTGCTCACCTTGTGGACTCCACAAATCAAGTTGGTCATTTTCAGAAGGTCCTGACTGCTATTGGGAACTTCTGCATATGTTCCATTGCTGTGGGAATGATAATAGAGATCATTGTCATGTACCCAATTCAACACCGACAATATCGTCCTGGGATTGACAATCTGCTTGTGCTTCTCATTGGAGGAATTCCTATAGCCATGCCTACTGTTTTGTCAGTGACAATGGCTATTGGATCCCATCGCTTAGCTCAACAGGGTGCTATTACTAAAAGAATGACAGCCATAGAAGAGATGGCAGGAATGGATGTATTATGTAGTGACAAAACTGGAACTTTGACTTTGAATAAACTGTCAGTAGACAAGAATCTTATTGAGATTTTTACTAAAGGAGTTGATGTAGATACAGTTGTTCTCATGGCTGCTCGGGCTGCAAGATTGGAAAACCAAGATGCTATAGATGCTGCAGTTGTAGGGATGTTAGGTGATCCAAAAGAGGCAAGAGCTGGTATTCAAGAGGTTCATTTCCTTCCCTTCAATCCAACTGACAAACGGACTGCCATGACTTATGTAGACAGTGAAGGTAAAATGCATCGTGTCAGCAAAGGCGCACCAGAACAGATTTTGAATCTTTCACACAATAAGTCAGAGATAGAACGCAGAGTTCATTCTGTCATCGATAAGTTTGCAGAGCGTGGCTTACGGTCTCTTGCAGTGGCTTACCAGGAAGTTCCTGATGGGATAAAAGAAAGCCAAGGAGGGCCTTGGCAATTTCTTGGACTCTTGCCTCTGTTTGACCCCCCTAGACATGATAGTGCTGAGACAATAAGAAGGGCATTAAACCTTGGAGTAAATGTTAAAATGATAACAGGTGATCAACTAGCAATAGGAAAAGAAACAGGGCGCCGTCTGGGAATGGGAACCAACATGTACCCCTCGTCCGCTTTACTGGGCCAAAACAAGGATGAATCAATTGCTACCTTGCCAGTTGATGATTTGATTGAAAAAGCAGATGGATTTGCTGGTGTTTTTCCTGAACACAAATATGAGATTGTGAGACGTTTACAAGCTAGAAAACACATATGTGGGATGACTGGTGATGGGGTTAATGATGCTCCTGCTCTTAAAAAGGCAGATATTGGAATAGCTGTTTCTGATGCTACTGATGCAGCTCGTAGTGCTTCTGACATTGTTCTAACTGAACCTGGTCTCAGTGTTATCATCAGTGCTGTATTGACTAGTCGAGCCATATTCCAAAGGATGAAGAATTACACGATCTACGCAGTTTCCATCACAATTCGAATTGTGCTTGGTTTCATGTTACTGGCCCTCATATGGCAATTTGATTTTCCACCATTCATGGTGCTGATTATTGCTATTCTTAATGATGGTACCATTATGACAATATCAAAGGACAGGGTAAAACCATCTCCATATCCAGATAGCTGGAAGTTGGCAGAAATCTTTACCACTGGAATAATTCTTGGTGGTTATTTGGCTATGATGACACAAACTTTTGGAGTTTCAAGCCTTCAGAAAAAGGACAGGGATGACTATAGAAAGCTTGCCTCGGCAATATACCTGCAAGTTAGCACAATTAGTCAGGCTCTCATATTCGTTACACGAGCAAGAAGTTGGTCTTATGTGGAACGTCCGGGTTTGTTACTAGTAGCAGCTTTTGTTATCGCCCAGCTAGTGAGTGAAATCAACACAGCAATAGCTACATTGATCGCAGTTTATGCAAATTGGACTTTTGCTGCGATTGAAGGGATTGGATGGGGTTGGGCTGGTGTTGTTTGGCTTTACAACCTTGTCTTTTACATGCCACTTGACTTTATCAAGTTCATAATTCGGTATGCTTTGAGTGGAAGGGCTTGGGATCTTGTTATTGAACAAAGGATTGCTTTTACAAGGAAAAAGAATTTTGGAAGGGAGGAACGTGAACTTAAATGGGCACATGCACAGAGAACACTCCATGGCCTTCATCCACCAGAGACTAAGATGTTCGGTGAACGAACAACTTACCCGGAACTCAATCATATGGCTGAAGAAGCTAAAAGACGAGCAGAGATTGCAAGACTGAGAGAACTGCATACATTGAAGGGCCATGTTGAGTCTGTGGTTAGACTGAAGGGCCTTGACATTGATACAATACAGCAATCATACACAGTCTAG 2613 0.4282 MADKEEAMHAVLKEAVDLENVPLEEVFQTLRCDSNGLTTKSAEERLAIFGHNKLEEKQVLRDGKWIEEDASVLVPGDIVSVKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPGDSVYSGSTCKQGEINAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMIIEIIVMYPIQHRQYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLAQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEIFTKGVDVDTVVLMAARAARLENQDAIDAAVVGMLGDPKEARAGIQEVHFLPFNPTDKRTAMTYVDSEGKMHRVSKGAPEQILNLSHNKSEIERRVHSVIDKFAERGLRSLAVAYQEVPDGIKESQGGPWQFLGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQNKDESIATLPVDDLIEKADGFAGVFPEHKYEIVRRLQARKHICGMTGDGVNDAPALKKADIGIAVSDATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWQFDFPPFMVLIIAILNDGTIMTISKDRVKPSPYPDSWKLAEIFTTGIILGGYLAMMTQTFGVSSLQKKDRDDYRKLASAIYLQVSTISQALIFVTRARSWSYVERPGLLLVAAFVIAQLVSEINTAIATLIAVYANWTFAAIEGIGWGWAGVVWLYNLVFYMPLDFIKFIIRYALSGRAWDLVIEQRIAFTRKKNFGREERELKWAHAQRTLHGLHPPETKMFGERTTYPELNHMAEEAKRRAEIARLRELHTLKGHVESVVRLKGLDIDTIQQSYTV 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00272 870 FunFam Plasma membrane ATPase 405 559 - -
Vian8g00272 870 PANTHER CALCIUM-TRANSPORTING ATPASE 19 58 - -
Vian8g00272 870 PRINTS H+-transporting ATPase (proton pump) signature 542 567 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian8g00272 870 PRINTS H+-transporting ATPase (proton pump) signature 673 694 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian8g00272 870 PRINTS H+-transporting ATPase (proton pump) signature 511 527 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian8g00272 870 PRINTS H+-transporting ATPase (proton pump) signature 368 386 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian8g00272 870 PRINTS H+-transporting ATPase (proton pump) signature 483 499 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian8g00272 870 Gene3D - 54 735 - -
Vian8g00272 870 Pfam haloacid dehalogenase-like hydrolase 248 525 - -
Vian8g00272 870 NCBIfam plasma-membrane proton-efflux P-type ATPase 58 717 IPR006534 GO:0008553|GO:0016020|GO:0120029
Vian8g00272 870 Gene3D - 249 548 IPR023214 -
Vian8g00272 870 SUPERFAMILY HAD-like 248 558 IPR036412 -
Vian8g00272 870 CDD P-type_ATPase_H 58 761 IPR006534 GO:0008553|GO:0016020|GO:0120029
Vian8g00272 870 SFLD Haloacid Dehalogenase 234 562 - -
Vian8g00272 870 FunFam Plasma membrane ATPase 264 411 - -
Vian8g00272 870 Pfam E1-E2 ATPase 56 232 - -
Vian8g00272 870 Gene3D - 55 139 - -
Vian8g00272 870 SUPERFAMILY Calcium ATPase, transmembrane domain M 17 767 IPR023298 -
Vian8g00272 870 FunFam Plasma membrane ATPase 55 139 - -
Vian8g00272 870 Pfam Cation transporter/ATPase, N-terminus 20 58 IPR004014 -
Vian8g00272 870 SFLD p-type atpase 234 562 IPR044492 -
Vian8g00272 870 SUPERFAMILY Calcium ATPase, transduction domain A 58 152 IPR008250 -
Vian8g00272 870 Gene3D - 264 411 IPR023299 GO:0000166
Vian8g00272 870 NCBIfam HAD-IC family P-type ATPase 40 271 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian8g00272 870 NCBIfam HAD-IC family P-type ATPase 486 600 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian8g00272 870 ProSitePatterns E1-E2 ATPases phosphorylation site. 254 260 IPR018303 -
Vian8g00272 870 PRINTS P-type cation-transporting ATPase superfamily signature 102 116 - -
Vian8g00272 870 PRINTS P-type cation-transporting ATPase superfamily signature 406 417 - -
Vian8g00272 870 PRINTS P-type cation-transporting ATPase superfamily signature 534 546 - -
Vian8g00272 870 PRINTS P-type cation-transporting ATPase superfamily signature 511 530 - -
Vian8g00272 870 PRINTS P-type cation-transporting ATPase superfamily signature 428 438 - -
Vian8g00272 870 PRINTS P-type cation-transporting ATPase superfamily signature 252 266 - -
Vian8g00272 870 Gene3D - 819 870 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00272 Vian-Chr8 4438493 4445311 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00272 58 870 Primary Pumps ATPases AT5G62670 86.336 0.0 1498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00272 K01535 - gmx:100818268 1495.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g00272 8 4438493 4445311 Vian8g00272 8 4438493 4445311 ECH