Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00242 ATGGGAAGGCCTCCTTGTTGTGACAAATCCAATGTGAAAAGGGGTCTTTGGACTCCTGAGGAAGATGCTAAAATACTTGCCTATGTAGCCAATCATGGAACTGGAAACTGGACATTGGTTCCAAAGAAAGCAGGTCTGAATAGATGGTCTTTAATTGCAAGAAGATTACCTGGGAGAACTGACAATGATGTGAAGAACTACTGGAACACAAAGCTAAGGAAGAAGCTTATGAAGATGGGAATTGATCCAGTGACTCATAAACCAGTATCACAAGTCCTCTCTGATTTGGGAAGCATCAGTGGCTTCCCAAACACCACCACCACTAACCAAATGGCTTATGTTAACAAGGATTTGATGATGAACAACATGGCACCAACCAAAACTGAACCATCAGGTTCCAATAAGTCAGTGGTGGAGAACACACAAGAGGGTCAAGTTCACTCATGGCAACACCACATTCCTTACCAAGTCCTCACCACAGAAAATGTGCAATCTCAAGTCTTCAGTGAAACTGCATCCTCCACCTCATCCTCATCTTCTTCCAACCTCACCCAGTTAGGCTCACCACAGTCCTACTCTTGCCAAACCCCTCAGGCTCAAACTGCCCCTCATTGTTCCTCCTTTGATTGGAGTGAGTTTCTTCACAGTGACTCATTTGTGTGGTCACTGAACCCCTCAAGTCTGGTGCAAAGTGAAGCTGATCTTTCCATCAATGCCAAAACCAATGGCCATGACAAACAAGGAGTTGCAGCAGTTGAGGGTTGTTGTGGTGGAAGCATGGAATATCAAATTAAAAAGCAATGTGAAGGTCATTCATTTGTAGATGGTATTCTGGACAGGGATAGTGAGTTAAGAGCAGCATTTCCAGAACTTTTGGATGCTTCTTTTGACTACTAA 897 0.4381 MGRPPCCDKSNVKRGLWTPEEDAKILAYVANHGTGNWTLVPKKAGLNRWSLIARRLPGRTDNDVKNYWNTKLRKKLMKMGIDPVTHKPVSQVLSDLGSISGFPNTTTTNQMAYVNKDLMMNNMAPTKTEPSGSNKSVVENTQEGQVHSWQHHIPYQVLTTENVQSQVFSETASSTSSSSSSNLTQLGSPQSYSCQTPQAQTAPHCSSFDWSEFLHSDSFVWSLNPSSLVQSEADLSINAKTNGHDKQGVAAVEGCCGGSMEYQIKKQCEGHSFVDGILDRDSELRAAFPELLDASFDY 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00242 298 MobiDBLite consensus disorder prediction 126 145 - -
Vian8g00242 298 SMART sant 13 74 IPR001005 -
Vian8g00242 298 MobiDBLite consensus disorder prediction 169 198 - -
Vian8g00242 298 PANTHER F14D16.11-RELATED 47 298 - -
Vian8g00242 298 Pfam Myb-like DNA-binding domain 14 70 IPR001005 -
Vian8g00242 298 SUPERFAMILY Homeodomain-like 3 81 IPR009057 -
Vian8g00242 298 CDD SANT 17 72 IPR001005 -
Vian8g00242 298 Gene3D - 11 78 - -
Vian8g00242 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 76 IPR017930 -
Vian8g00242 298 ProSiteProfiles Myb-like domain profile. 9 72 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00242 Vian-Chr8 3485731 3487600 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00242 1 298 MYB Transcription Factor Family AT3G28470 38.587 1.46e-52 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian8g00242 Myb_DNA-binding 6.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00242 K09422 - gmx:100815077 488.419