Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00220 ATGGGTGGTGGCAGTGGTGATAGTGGTGATAGTGGTGATGGTGACCATAACAATTCTATTTCCATGGTTGTTAAGAACAAGAAGAGTGGCTCTATTCGGTCCATTTTTATGCATGCTGATGGCCTGGACATGTTTCTCATGATTTTCGGATTGATTGGAGCCATTGGTGATGGCTTAGGCACCCCTTTGGTGTTGTTTATCACCAGCAAAATCATGAATAATATTGGAAATTTTTCTGGTGGAATAGATAGCACTTTCCTCGACAGCATCAATAAGAATGCTCTGGTTTTGTTATACTTGGCTTGTGGGTCTTTTGTTGCTTGTTTTCTAGAGGGTTATTGTTGGACAAGAACCGGCGAAAGACAAGCTGCTAGAATGAGAGTGAGGTACCTCAAGGCAGTGTTGAGGCAAGAAGTCGCATACTTTGATTTGCATGTCAGTAGCACATCCGAGGTCATCACCAGTGTCTCTAATGACAGCCTCGTAATTCAGGATGTTCTTAGTGAAAAGGTTCCAAATTTTTTGATGAATGCCTCTATGTTTGTGGCGAGCTACATAGTGGGTTTTGCATTATTATGGAGATTGACCCTTGTGGGGTTCCCTTTCGTGGTTCTACTTGTGATCCCTGGTTTTATGTATGGGAGGACACTAATGGGGTTGGCCAGCAAGATGAGAGAAGAATACGACAAGGCTGGTACAGTGGCAGAACAAGCAATATCTTCCATCAGAACAGTTTACTCCTTTGTGGGTGAAAGCAAAACCATAGATGCTTTCTCTGATGCTCTACAAGGTTCAGTAAAGTTAGGACTCAGACAAGGCTTAGCAAAAGGCATAGCTATCGGAAGCAATGGTGTTGTGTTTGCTATATGGGCTTTCATATCCTATTATGGTAGCAGATTGGTCATGTACCACGGTGCCAAAGGAGGAACTGTGTTTGCGGTTGGAGCAGCCATAGCACTTGGAGGATTGGCCTTAGGTGCTGGTTTGTCGAACGTGAAGTACTTGTCAGAGGCAAGCACGGCAGGAGAACGCATAATGGAAGTGATAAAAAGGGTTCCGAAGATCGATTCAGACAACATGGGAGGGGAGATTCTGGAGGAGGTTTGTGGTGAAGTTGAGTTTGAGGATGTGAAGTTTGTGTACCCTTCGAGGCCTGACAGTGTGATTCTGAAGGAGTTCAGCCTGAGGGTTCCTGCTGGGAAAACAGTGGCACTGGTTGGAGGAAGTGGGTCAGGAAAATCCACAGTGATATCTCTTCTGCAGAGATTCTATGACCCAGTTGAGGGAGAGATACGTGTTGATGGTGTGGCCATTCACAGGTTGCAACTCAAGTGGTTGAGGTCTCAAATGGGGTTGGTGAGTCAAGAGCCTGCACTCTTTGCAACCACCATTAAAGAGAATATACTGTTTGGAAGAGAAGATGCAACTGAGGAAGAGGTTCTCCAAGCTGCAAAAGCTTCCAATGCTCATAATTTCATCTCACAGTTGCCACAAGGATATCATACTCAGGTGGGGGAGAGAGGAATTCAAATGTCAGGGGGACAAAAGCAAAGAATTGCTATAGCACGAGCAATAATAAAGAAGCCACGAATTCTTTTGTTAGATGAAGCAACGAGTGCCCTAGATTCTGAGTCCGAACGAGTTGTGCAAGAAGCATTGGACAAAGCAGCAGTGGGGCGCACCACGATCATCATTGCTCATCGATTATCCACCATAAGAAACGCAGATGTGATTGCTGTGATGCAAAGTGGGAAGATCATGGAAATGGGGTCACACCATGAACTCATCCAAAACGACAATGGCCTCTACACCTCTCTAGTTCGTCTGCAACAGGCAAAAGACGAAAGAGAAGACACCCCTTTTCACCCTCTTGCTCCTCCTTCGTCATTATCATCATCATCCATATCAAACAAGGACAATCACAACACAAGCAGTCGTAGGTTGTCTCTTGTGAGTCGATCCAGTTCTGCCAACTCAATCCCTCGTGGTGATGATGTTGTTGAAGATGTTGTGGAAGAAGACATGAAGCTGCCACTTCCCTCCTTTCGAAGATTGCTGGCATTGAATATTCCTGAGTGGAAGCAAGCATGTATGGGGTGTTTGAATGCAGTGTTGTTTGGTGCAATACAACCTGTGTATGCATTTTCAATGGGGTCGGTGATATCTGTTTACTTTCTCCCAGACCATGATGAGATTAAAGAGAAAACCAGGATCTACTCCCTTTGTTTTCTAGGGTTGGCTGTGTTCTCCTTGGTGGTTAACATCCTCCAACACTATAACTTTGCTTACATGGGAGAGTACTTAACCAAAAGGATCAGAGAACGAATGCTTTCCAAGATACTCACTTTTGAAGTTGGATGGTTCGATCAAGATGAAAATTCCACCGGTGCTGTTTGTTCTAGACTTGCCAAAGAAGCCAATGTGGTAAGGTCTTTGGTGGGAGACAGAATGGCTCTAGTGGTGCAAACCATTTCTGCAGTGGTGATAGCTTTCACTATGGGCCTAGTCATTGCATGGAGGTTGGCCATTGTTATGATAGCAGTTCAACCGATTATCATAGCCTGCTTCTACACAAGGCGTGTTCTTCTCAAGAGCATGTCTAGCAAGGCCATCAAGGCGCAAGATGAAAGCAGCAAGATAGCTGCAGAAGCTGTTTCCAACCTCAGAACCATCACAGCATTTTCTTCCCAAGAGAGGATCCTGAAGATGCTTGAAAAGGCACAAGAGGGACCAAGTCATGAAAGCATTCGGCAATCATGGTTTGCAGGTGTTGGTCTTGCCTGTTCCCAGAGCCTTACGTTTTGCACTTGGGCCTTGGACTTCTGGTATGGGGGAAAGCTTGTGTTCAAAGGGATCATCAGTGCCAAAGCATTGTTTGAGACCTTCATGATCTTAGTGAGTACAGGTAGGGTCATTGCAGATGCTGGCAGCATGACCAATGACCTTGCCAAAGGTTCTGATGCTGTGGGTTCAGTTTTTGCAATCCTAGACAGGTACACAAAAATTGAGCCTGATGATGAGACAGATGGACACAAGCCTGAAAAATTAACTGGGAAAATAGAGCTTCATGATGTCCATTTTGCATACCCAGCCAGGCCTAATGTGATGATCTTTCAAGGCTTCTCAATCAGAATAGATGCAGGCAAATCAACAGCATTGGTAGGGCAAAGTGGTTCTGGAAAATCAACAATAATAGGGCTAATAGAGAGATTCTATGACCCACTAAAAGGGATAGTGGCCATAGATGGTAGAGACATAAAACAATATCATCTTAGGTCACTGAGGAAGCACATTGGTCTGGTGAGCCAAGAGCCAACATTGTTTGGTGGGAGCATAAGGGAAAACATTGCATATGGAGCATGTAACAAGGTTGATGAAAGTGAGATCATAGAAGCAGCAAGGGCTGCAAATGCTCATGACTTCATTGCAAGTCTGAAGGATGGATATGAAACATGGTGTGGAGATAGAGGAGTGCAACTCTCAGGGGGTCAGAAGCAAAGAATTGCAATAGCAAGAGCCATACTGAAGAACCCTGAAGTGCTGTTGCTGGATGAAGCCACCAGTGCTTTTGATAGCCAGTCAGAGAAATTGGTGCAAGATGCTCTAGACAGGGTGATGGTGGGAAGAACTAGTGTGGTGGTGGCTCACAGGTTAAGCACAATACAGAACTGTGATCAAATTGCTGTGCTAGACAAGGGAAAAGTGGTGGAGAAAGGGACTCATTCATCTTTGTTGGCTCAAGGACCAAGTGGAGCTTATTACTCTTTGGTGAGTTTGCAAAGAAGACCAACAAAACATGAAGGTTAA 3807 0.4484 MGGGSGDSGDSGDGDHNNSISMVVKNKKSGSIRSIFMHADGLDMFLMIFGLIGAIGDGLGTPLVLFITSKIMNNIGNFSGGIDSTFLDSINKNALVLLYLACGSFVACFLEGYCWTRTGERQAARMRVRYLKAVLRQEVAYFDLHVSSTSEVITSVSNDSLVIQDVLSEKVPNFLMNASMFVASYIVGFALLWRLTLVGFPFVVLLVIPGFMYGRTLMGLASKMREEYDKAGTVAEQAISSIRTVYSFVGESKTIDAFSDALQGSVKLGLRQGLAKGIAIGSNGVVFAIWAFISYYGSRLVMYHGAKGGTVFAVGAAIALGGLALGAGLSNVKYLSEASTAGERIMEVIKRVPKIDSDNMGGEILEEVCGEVEFEDVKFVYPSRPDSVILKEFSLRVPAGKTVALVGGSGSGKSTVISLLQRFYDPVEGEIRVDGVAIHRLQLKWLRSQMGLVSQEPALFATTIKENILFGREDATEEEVLQAAKASNAHNFISQLPQGYHTQVGERGIQMSGGQKQRIAIARAIIKKPRILLLDEATSALDSESERVVQEALDKAAVGRTTIIIAHRLSTIRNADVIAVMQSGKIMEMGSHHELIQNDNGLYTSLVRLQQAKDEREDTPFHPLAPPSSLSSSSISNKDNHNTSSRRLSLVSRSSSANSIPRGDDVVEDVVEEDMKLPLPSFRRLLALNIPEWKQACMGCLNAVLFGAIQPVYAFSMGSVISVYFLPDHDEIKEKTRIYSLCFLGLAVFSLVVNILQHYNFAYMGEYLTKRIRERMLSKILTFEVGWFDQDENSTGAVCSRLAKEANVVRSLVGDRMALVVQTISAVVIAFTMGLVIAWRLAIVMIAVQPIIIACFYTRRVLLKSMSSKAIKAQDESSKIAAEAVSNLRTITAFSSQERILKMLEKAQEGPSHESIRQSWFAGVGLACSQSLTFCTWALDFWYGGKLVFKGIISAKALFETFMILVSTGRVIADAGSMTNDLAKGSDAVGSVFAILDRYTKIEPDDETDGHKPEKLTGKIELHDVHFAYPARPNVMIFQGFSIRIDAGKSTALVGQSGSGKSTIIGLIERFYDPLKGIVAIDGRDIKQYHLRSLRKHIGLVSQEPTLFGGSIRENIAYGACNKVDESEIIEAARAANAHDFIASLKDGYETWCGDRGVQLSGGQKQRIAIARAILKNPEVLLLDEATSAFDSQSEKLVQDALDRVMVGRTSVVVAHRLSTIQNCDQIAVLDKGKVVEKGTHSSLLAQGPSGAYYSLVSLQRRPTKHEG 1268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00220 1268 CDD ABC_MTABC3_MDL1_MDL2 1020 1260 - -
Vian8g00220 1268 Pfam ABC transporter 1040 1188 IPR003439 GO:0005524
Vian8g00220 1268 FunFam ABC transporter B family member 4 362 617 - -
Vian8g00220 1268 Gene3D ABC transporter type 1, transmembrane domain 35 615 IPR036640 GO:0005524|GO:0016020
Vian8g00220 1268 SUPERFAMILY ABC transporter transmembrane region 678 1003 IPR036640 GO:0005524|GO:0016020
Vian8g00220 1268 FunFam Putative ABC transporter B family member 8 662 1007 - -
Vian8g00220 1268 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 372 608 IPR003439 GO:0005524
Vian8g00220 1268 ProSitePatterns ABC transporters family signature. 1160 1174 IPR017871 GO:0005524|GO:0016887
Vian8g00220 1268 Gene3D - 362 611 IPR027417 -
Vian8g00220 1268 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1020 1257 IPR003439 GO:0005524
Vian8g00220 1268 PANTHER ABC TRANSPORTER B FAMILY 24 748 IPR039421 -
Vian8g00220 1268 SUPERFAMILY ABC transporter transmembrane region 43 356 IPR036640 GO:0005524|GO:0016020
Vian8g00220 1268 Gene3D ABC transporter type 1, transmembrane domain 639 1005 IPR036640 GO:0005524|GO:0016020
Vian8g00220 1268 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1011 1260 IPR027417 -
Vian8g00220 1268 FunFam ABC transporter B family member 4 1010 1266 - -
Vian8g00220 1268 Pfam ABC transporter transmembrane region 698 966 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian8g00220 1268 Pfam ABC transporter transmembrane region 47 314 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian8g00220 1268 CDD ABC_MTABC3_MDL1_MDL2 372 610 - -
Vian8g00220 1268 Gene3D - 1010 1267 IPR027417 -
Vian8g00220 1268 SMART AAA_5 1047 1240 IPR003593 GO:0016887
Vian8g00220 1268 SMART AAA_5 399 673 IPR003593 GO:0016887
Vian8g00220 1268 MobiDBLite consensus disorder prediction 614 663 - -
Vian8g00220 1268 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 703 984 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian8g00220 1268 FunFam ABC transporter B family member 1 34 368 - -
Vian8g00220 1268 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 366 610 IPR027417 -
Vian8g00220 1268 ProSitePatterns ABC transporters family signature. 511 525 IPR017871 GO:0005524|GO:0016887
Vian8g00220 1268 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 48 337 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian8g00220 1268 CDD ABC_6TM_Pgp_ABCB1_D2_like 686 1002 - -
Vian8g00220 1268 Pfam ABC transporter 390 539 IPR003439 GO:0005524
Vian8g00220 1268 MobiDBLite consensus disorder prediction 625 661 - -
Vian8g00220 1268 CDD ABC_6TM_Pgp_ABCB1_D1_like 47 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00220 Vian-Chr8 3086240 3092986 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00220 10 1261 Calmodulin-binding Proteins AT2G36910 44.811 0.0 1077
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00220 K05658 - gmx:100807709 2133.22