Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00219 ATGGATGATGCCTTACATTTTCTGAATAGAGTGAAAGATGTGTTTTGGGACCAAAGGGAGAAGTATGACATGCTGATTCAGATCCTCAAAGATTACAAGGATGAAAGGATTACCTGTGCTGTTGTGGCTGCAAGGGTGAAGGAGTTACTGAGAGGGCACCACACTTTGATTTTGAGATTCAACAATTTCTTGCCAAAGGAGCATGAGATCAAACTTAACGAACCTCGTCAAGAATTAGTCCGTTTAGTTGACAACATTAAGGAACGATTCAAAAATGATCAGCCTGCTTACGCATCATTCTTGGTGAGTATGAAAACCTACAAAGAAGATAAGCGAAAGACAACCTGTGATCTTCATGGGGAGATTGCTATCCTTTTTAAGGACCATCAAGATCTGCTCGAGGAGTTCACCAGATTATTACCTAATTATGATGCAATTGGCTTTGAAGAGACTGTTCATGATAAAAAGCCGACACTGATCATTCCCAAGTGCAAGCAAGCATGTTTAGATAACAAGGAAAACAAAGATATGTTCGTTTTGCTTCCTAGGGTGAGAGAGGGATTGCTCTCAAAGATTCTTGCCATTGGAGATGGATGGTTCTCTCAGAAGGAAACTTTCAGATGTGATCTTTGCCATAGATTTGCCGAAGAAAGTGTGGTTAAGCCTCTGATGGGACAGAAAATGGGATTAGGGTTTCAAACAATTTGTGCAGTGGGAATAGGTTTGAGTGTGGGTCTTATGTTTTCATGGAAAGTAGCCATTGCAGTGATAGTTGTTCAACTTGTTATCATTGTTTGCTTCTACACAAGAGGTGTCTTCAAGATCATGAAGGTCCATGATAATTGA 846 0.4019 MDDALHFLNRVKDVFWDQREKYDMLIQILKDYKDERITCAVVAARVKELLRGHHTLILRFNNFLPKEHEIKLNEPRQELVRLVDNIKERFKNDQPAYASFLVSMKTYKEDKRKTTCDLHGEIAILFKDHQDLLEEFTRLLPNYDAIGFEETVHDKKPTLIIPKCKQACLDNKENKDMFVLLPRVREGLLSKILAIGDGWFSQKETFRCDLCHRFAEESVVKPLMGQKMGLGFQTICAVGIGLSVGLMFSWKVAIAVIVVQLVIIVCFYTRGVFKIMKVHDN 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00219 281 SUPERFAMILY PAH2 domain 1 66 IPR036600 GO:0006355
Vian8g00219 281 SUPERFAMILY ABC transporter transmembrane region 182 269 IPR036640 GO:0005524|GO:0016020
Vian8g00219 281 Gene3D ABC transporter type 1, transmembrane domain 181 270 IPR036640 GO:0005524|GO:0016020
Vian8g00219 281 Gene3D Paired amphipathic helix 3 65 IPR036600 GO:0006355
Vian8g00219 281 Pfam ABC transporter transmembrane region 183 270 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian8g00219 281 ProSiteProfiles PAH domain profile. 68 143 IPR003822 GO:0006355
Vian8g00219 281 PANTHER SIN3B-RELATED 2 145 IPR039774 GO:0003714
Vian8g00219 281 ProSiteProfiles PAH domain profile. 1 67 IPR003822 GO:0006355
Vian8g00219 281 Pfam Paired amphipathic helix repeat 97 138 IPR003822 GO:0006355
Vian8g00219 281 Pfam Paired amphipathic helix repeat 20 64 IPR003822 GO:0006355
Vian8g00219 281 FunFam Paired amphipathic helix protein Sin3 3 65 - -
Vian8g00219 281 Gene3D Paired amphipathic helix 76 143 IPR036600 GO:0006355
Vian8g00219 281 SUPERFAMILY PAH2 domain 79 141 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00219 Vian-Chr8 3076421 3078665 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00219 3 72 WRKY Transcription Factor Family AT4G12020 44.286 8.43e-12 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vian8g00219 ABC_membrane 1.5e-06 CL0241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00219 K11644 - var:108345401 494.582