Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00218 ATGAAGAGGGCAAGGGATGATATGTACTCTGCCTCTGCCTCTCAATTCAAACGCCCCCCTTTTTCTTCCTCGCGTGCTGATTCCTATGCACAAGTCCCTGGAAATGGAGGGGGAGGGGGTGGAGGAGGTAGCAATGGAGGTGGTGTTGGTGGGGGAGCAACTACATCCCAGAAGCTGACTACCAATGATGCCTTATCCTATTTGAAGGAAGTCAAAGACATGTTTCAGGACCAAAGAGAGAAGTATGACATGTTCCTTGAGGTCATGAAAGATTTCAAGGCTCAAAGGACTGACACAGCTGGTGTCATAGCAAGGGTGAAAGAATTGTTTAAAGGGCACAACAATTTGATTTTTGGATTTAACACATTCCTGCCTAAAGGTTATGAGATAACACTGGATGAGGATGAGGCTCCTCCCAAGAAAACAGTTGAATTTGAAGAAGCAATCAGTTTTGTGAACAAGATAAAGAAACGGTTCCAAAGTGATGAGCATGTTTACAAATCATTCTTGGACATTTTAAACATGTATCGCAAAGAGCACAAGGACATTGGCGAGGTTTATAGTGAGGTTGCTACCCTCTTCAAGGACCATCGAGATTTGCTTGAGGAGTTCACTAGATTCTTACCGGATACTTCTGCTGCACCTTCCACACAGCATGCTCCATATAGTCGAAATTCATTGCAGCGCTTTAATGAGCGGAGTTCTACGGCCCCAATGATGCGCCAAATGCCACCAGACAAGCAACGTTATCGAAGAGAAAGACTTCCTTCTCATGATCATGATATGATTGCTGAACGCCCTGAGATGGATGATGACAAAACAATGTTGAACATACACAAGGAGAGGAAGCGAGACAATAGGGATAGGAGAATGCGTGATCAGGATGAGAGAGAACAAGATCTTGATAATAGCAGGGATTTGAACTTGCAACGTTTTCCTGACAAAAAGAAAGCTGTCAAGAAGGCTGAAGGTTTTGGAATGGCTTCCGAATTTCCTTCTTATGAAGACAAAGATACCTTAAAGAGCATGTATAGTCAAGCATTCAGTTTCTGTGAGAAAGTTAAGGAGAAGCTGAGCAGTTCTGATGATTACCAGACATTCTTGAAATGCCTTCATATTTTCAGCAATGGAATAATTAAAAGGAATGATTTGCAAAATTTGGTAACTGATTTACTTGGAAAGCATTCAGATCTTATGGACGAATTCAATGATTTCCTGGAGCGTTGTGAAAATATTGATGGATTCCTTGCTGGTGTCATGAGTAAAAAATCACTATCTACTGATGCTCATTTGGCAAGACCGTCAAAGTTGGAGGACAAAGACAGAGAGCACAAGCGTGATATGGATGGAGCCAAAGAGAAGGAAAGATACAAGGAGAAATACATGGGAAAATCCATTCAAGAACTTGACCTTAGTGACTGCAAACGTTGTACTCCCAGCTACCGGCTTTTGCCTGCAGATTATCCAATTCCTACTGCTAGTCAGAGATCTGAGCTTGGTGCTCAAGTATTGAATGACCACTGGGTATCTGTGACTTCTGGAAGTGAGGATTACTCTTTCAAACATATGCGGAGAAATCAGTATGAAGAAAGCTTGTTCAGATGTGAAGATGACAGATATGAGCTGGACATGTTACTAGAGTCTGTGAGTTCAGCTGCTAAACGAGCAGAGGAATTGTATAATAACATTAATGAAAATAAAATCAGTGTGGAGACTCTGAACCGTATTGAAGAGCACTTTACTGTTCTAAATTTAAGGTGCATTGAACGTCTCTATGGTGATCATGGTCTTGACGTAATAGACATACTGCGGAAAAACCCAACCCATGCCCTTCCTGTAATATTGACTCGACTGAAGCAGAAGCAAGAGGAGTGGAGTAGGTGTCGTTCAGATTTCAATAAAGTATGGGCTGAAATTTATGCTAAAAATCACTACAAATCACTGGATCATCGCAGCTTCTATTTCAAACAACAAGATTCTAAGAATTTGAGCACAAAATCTTTGGTTGCTGAGATTAAAGAAATTAAAGAAAAACAGCAGAAAGAAGATGATATTATTCAGTCTATCGCTGCTGGAAATAAACAGCCTCTAATTCCTCATTTGGAATTTGAATATCCTGATGCTGCTGGGATTCATGAAGACCTGTATAAACTTGTTCGATATTCATGTGAGGAGTTATTCTCAAGTAAAGAGTTGTTAAATAAAATTATGAGGCTGTGGAGTACCTTTTTGGAGCCAATGCTTGGTGTTCCTACCCAGTCTCATGCAACAGAAAGGACAGAGGATAGAAAAACTGGGCATAATGTTCGAAATTTTGGTGTACCGAGCATAGGGGATGACAGAAGCCCTCACGGAGACTCTCTTTCAATGAATTCAAGGTTACCAAAATCTGATAAGAATGAAGCTGATGGTAGACTAACTGACGCAAAGAATGTTCAGCGTGCTAATATGGCAACCAACGATAAAGAAAATGGATCTGTTGGTGGTGAACATGGTTGTAGGGATGATCCATTGATGGACAAAGGACTGAAAAATGTAGAATGCAATGACAAAGCCTCCGGGTTTAGCAAACCATTTACCTCTGATGATCAAGGAGCTAAAAACAGTGTGTCAATTGCAATTAGAGGAGAAAACAGCCTGAACAGGACCAACTTAGCTGCATCACCAGCGCGTGCCCTTACTCCATCACAACCAACTGATGTTGATGATTCTGTAGCCAAGTCTCAGGTTGCTAATGTACCATTGGTGGAGGGATGTGACATGGCAACTCCAGTACCTGTGGCCAATGGTGTTTTAAGTGAAAGCAGTAAAGTTAAAAATCACGATGAATCTGCTGGGCCTTGCAAAATTGAAAAGGAAGAGGGAGAATTATCACCAAATGGTGACTCGGAGGAGGATAACTTTGTTGCCTACAGAGATTCAAATGTGCAGTCAATGGCTAAAGCAAAACACAACACTGAAAGAAGAAAGTATCAGTCTAGAAACGGAGAGGATGAATGTTGTCCTGAGGCTGGAGGTGACAATGATGCAGATGCTGACGATGAGGACAGTGAAAATGTTTCTGAAGCTGGTGAAGATGTCTCAGGCAGTGAATCTGCTGGTGATGAATGCTTTCGGGAAGATCATGAAGAGGAGGAAGATATCGAACAAGATGATGTTGATGGTAAGGCTGAGAGTGAAGGTGAAGCTGAGGGGATCTGTGATGCACAAGCTGGAGGAGACGGCACATCTTTGCCATTGTCAGAAAGGTTCCTTTCATCTGTGAAACCTCTCACAAAGCATGTATCAGCAGTTTCATTTGTTGAAGAAATGAAGGAGTCAAGGGTGTTCTATGGAAATGATGACTTCTATGTGCTTTTTAGACTTCATCAAACTCTTTATGAGAGGATCTTATCAGCAAAAACAAATTCAATGAACGCGGAATTAAAATGGAAAGCAAAAGATGCTAGCTTACCAGATCCTTATTCAAGATTTAGGAACGCATTGTACAATTTGTTGGATGGATCTGCTGAAAATGCAAAGTTTGAAGATGAATGCCGAGCAATTATAGGGAACCAATCATACGTGTTATTCACCTTGGACAAGTTAATATACAAATTGGTTAGACAGCTTCAAACTGTTGCAACTGATGAGGTCGACAGTAAGCTTCTCCAATTATATGAATATGAAAGGTCTCGGAAGCCTGGAAAGTTAAATGATTCTGTATATCATGCAAATGCTCATGTCGTCCTTCACGAGGATAATATATATCGGATACAATGTTCCTCTAGCCCCTCACGACTATCCATCCAGTTTATGGACAATATGAATGAAAAGCCTGAATTGTTTGCCGTTTCTATTGATCCAAATTTCTCCTTTTATCTGCACAATGATTTTCTATCTGTCTTTCCCGGCAAAAAGGAACCCCATGGCATCATACTGCACAGAAACAAACGCAAATATGGAAACTTAGATGAGCTTTCTGCAATATGCTCTGCCATGGAAGGTGTTAAAGTAATTAATGGATTGGAATGCAAGATATCTTGCAACTCATCCAAGATTTCTTATGTTCTTGACACACAAGACTTCTTCTTCCGGCCGAGAAAGAGGAGACGAACGCCGGCAGGGACAACAACCTCCCAGTTTCGTAGGGACAGAGAGGAAAGATTCCGCAAATTGTTGGCATGCTCGTAA 4173 0.4124 MKRARDDMYSASASQFKRPPFSSSRADSYAQVPGNGGGGGGGGSNGGGVGGGATTSQKLTTNDALSYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKELFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAISFVNKIKKRFQSDEHVYKSFLDILNMYRKEHKDIGEVYSEVATLFKDHRDLLEEFTRFLPDTSAAPSTQHAPYSRNSLQRFNERSSTAPMMRQMPPDKQRYRRERLPSHDHDMIAERPEMDDDKTMLNIHKERKRDNRDRRMRDQDEREQDLDNSRDLNLQRFPDKKKAVKKAEGFGMASEFPSYEDKDTLKSMYSQAFSFCEKVKEKLSSSDDYQTFLKCLHIFSNGIIKRNDLQNLVTDLLGKHSDLMDEFNDFLERCENIDGFLAGVMSKKSLSTDAHLARPSKLEDKDREHKRDMDGAKEKERYKEKYMGKSIQELDLSDCKRCTPSYRLLPADYPIPTASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRYELDMLLESVSSAAKRAEELYNNINENKISVETLNRIEEHFTVLNLRCIERLYGDHGLDVIDILRKNPTHALPVILTRLKQKQEEWSRCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKEIKEKQQKEDDIIQSIAAGNKQPLIPHLEFEYPDAAGIHEDLYKLVRYSCEELFSSKELLNKIMRLWSTFLEPMLGVPTQSHATERTEDRKTGHNVRNFGVPSIGDDRSPHGDSLSMNSRLPKSDKNEADGRLTDAKNVQRANMATNDKENGSVGGEHGCRDDPLMDKGLKNVECNDKASGFSKPFTSDDQGAKNSVSIAIRGENSLNRTNLAASPARALTPSQPTDVDDSVAKSQVANVPLVEGCDMATPVPVANGVLSESSKVKNHDESAGPCKIEKEEGELSPNGDSEEDNFVAYRDSNVQSMAKAKHNTERRKYQSRNGEDECCPEAGGDNDADADDEDSENVSEAGEDVSGSESAGDECFREDHEEEEDIEQDDVDGKAESEGEAEGICDAQAGGDGTSLPLSERFLSSVKPLTKHVSAVSFVEEMKESRVFYGNDDFYVLFRLHQTLYERILSAKTNSMNAELKWKAKDASLPDPYSRFRNALYNLLDGSAENAKFEDECRAIIGNQSYVLFTLDKLIYKLVRQLQTVATDEVDSKLLQLYEYERSRKPGKLNDSVYHANAHVVLHEDNIYRIQCSSSPSRLSIQFMDNMNEKPELFAVSIDPNFSFYLHNDFLSVFPGKKEPHGIILHRNKRKYGNLDELSAICSAMEGVKVINGLECKISCNSSKISYVLDTQDFFFRPRKRRRTPAGTTTSQFRRDREERFRKLLACS 1390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00218 1390 ProSiteProfiles PAH domain profile. 141 211 IPR003822 GO:0006355
Vian8g00218 1390 MobiDBLite consensus disorder prediction 211 309 - -
Vian8g00218 1390 MobiDBLite consensus disorder prediction 430 453 - -
Vian8g00218 1390 SUPERFAMILY PAH2 domain 55 126 IPR036600 GO:0006355
Vian8g00218 1390 MobiDBLite consensus disorder prediction 751 830 - -
Vian8g00218 1390 MobiDBLite consensus disorder prediction 1038 1058 - -
Vian8g00218 1390 Gene3D Paired amphipathic helix 140 212 IPR036600 GO:0006355
Vian8g00218 1390 MobiDBLite consensus disorder prediction 933 1073 - -
Vian8g00218 1390 FunFam Paired amphipathic helix protein SIN3 337 411 - -
Vian8g00218 1390 ProSiteProfiles PAH domain profile. 57 127 IPR003822 GO:0006355
Vian8g00218 1390 MobiDBLite consensus disorder prediction 936 957 - -
Vian8g00218 1390 SUPERFAMILY PAH2 domain 343 409 IPR036600 GO:0006355
Vian8g00218 1390 MobiDBLite consensus disorder prediction 245 309 - -
Vian8g00218 1390 SUPERFAMILY PAH2 domain 138 210 IPR036600 GO:0006355
Vian8g00218 1390 Gene3D Paired amphipathic helix 63 125 IPR036600 GO:0006355
Vian8g00218 1390 Pfam C-terminal domain of Sin3a protein 1110 1357 IPR031693 -
Vian8g00218 1390 MobiDBLite consensus disorder prediction 211 238 - -
Vian8g00218 1390 MobiDBLite consensus disorder prediction 982 1001 - -
Vian8g00218 1390 MobiDBLite consensus disorder prediction 15 30 - -
Vian8g00218 1390 SMART hdac_interact2seq4b 473 573 IPR013194 -
Vian8g00218 1390 Pfam Sin3 family co-repressor 475 567 IPR013194 -
Vian8g00218 1390 Gene3D Paired amphipathic helix 338 411 IPR036600 GO:0006355
Vian8g00218 1390 MobiDBLite consensus disorder prediction 432 453 - -
Vian8g00218 1390 FunFam Paired amphipathic helix protein Sin3 63 125 - -
Vian8g00218 1390 PANTHER SIN3B-RELATED 57 1252 IPR039774 GO:0003714
Vian8g00218 1390 Coils Coil 546 566 - -
Vian8g00218 1390 MobiDBLite consensus disorder prediction 1002 1022 - -
Vian8g00218 1390 MobiDBLite consensus disorder prediction 1 55 - -
Vian8g00218 1390 ProSiteProfiles PAH domain profile. 340 409 IPR003822 GO:0006355
Vian8g00218 1390 Pfam Paired amphipathic helix repeat 80 124 IPR003822 GO:0006355
Vian8g00218 1390 Pfam Paired amphipathic helix repeat 164 208 IPR003822 GO:0006355
Vian8g00218 1390 Pfam Paired amphipathic helix repeat 362 406 IPR003822 GO:0006355
Vian8g00218 1390 FunFam Paired amphipathic helix SIN3-like protein 140 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00218 Vian-Chr8 3042147 3051331 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00218 42 160 WRKY Transcription Factor Family AT4G12020 50.000 4.49e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vian8g00218 Sin3a_C 2.8e-54 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00218 K11644 - gmx:100807181 2407.1