Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00196 ATGGACTTTCTCCTAAATTGCTTAACCTTAAACACCACCACTCTTATTGCATCGTTTCTTTCTCTAATCTTCTTATTTTTCTATCTATATCGTAGAATTTGTTCTGAGAAACGAGCTCCAACAGTGAAAGGTGCATGGCCAATACTTGGTCATCTTTCACTGTTAAATGGTTCAAAAACACCCCATAGAACTTTGGCTGCTTTGGCTGACAAGTATGGACCCTTGTTCACCATCAAACTCGGTCTGAAAGATGCTTTGGTGCTCAGCAACTGGGAAATGTCCAAGGAACTCTTCACCACAAACGACCTTGCCGTTTCATCACGCCCTAAACTCGTTGCTGTGGAAGTCATGTCCTACAACCAAGCCTTCGTAGGGTTGGCTCCATACGGACCCTATTGGCGAGAGCTTCGAAAGATTGTGACTGTTGACTTTCTCTCCAACCGCAGAATAGAGCAACTCAGCCACATTCGTATCTCAGAGATTCAAACCTCATTCAAAGAGCTATACGATTTATGCTATACTAGTGTAAACAACAAGAAGGAGAATGAATCTAGTTATGATGCTGCTACTTTGGTGGACATGAAAGAGTGGTTTGAACATTTGACTTTCAATATAATAGTGAGGATGGTGGTGGGGAAGAGGTACTTTGGTGTGGCGCATGTGGAGGGCAAGGAGAAGGCAGAAAGGTTTATGAAGAATTTAGATGAGTTCATGAATTTGATGAGCACTTTCACTGTGGCTGATGGGGTTCCTTGCTTGAGGTGGTTGGACTTTGGGGGCCATGAGAAGGCCATGAAAGCAACGGCTGAGGAAATGGACAAGCTGTTGAGTGAGTGGTTGGAGGAGCACCGTGAGAAGAATGGTTTGGATGGAAAGGTTAAGGGCGATCAAGACTTCATGGATGTGATGATTTCAGCACTTAATGGGGCTCCGATTCATGGGTTTGATGCTGATACCATTTGCAAAGCCACTACCCTGGAATTGATTTTGGGTGGAACTGATACAACTGCTTTTACTCTTACATGGGCACTTAGTCTGCTAGTACGAAATCCTCTTGCAATGGAAAAGGCTAAAGAAGAAATAGACATGCATATTGGGAAAGATGGATACATAAGAGAATCAGACATAAGCAAACTTGTGTATCTTCAAGCCATAATCAAAGAGACATTAAGATTGTATCCACCAGCACCTCTTTCATCACCTCGTGTGTTCTCAGAAAATTGCATCTTAGGTGGCTACCACATAAGAAAAGGAACTCGACTAATGCATAACCTGTGGAAGATCCACAGAGACCCTAGTGTTTGGTCAGATCCTTTAGAATTCAAACCAGAAAGGTTCCTCACCACTCACCAACATGTGGATCTCAGGGGTCGACATTTTGAGTTGTTACCCTTTGGAAGTGGGAGAAGAATGTGTGCTGGAATGTCCCTTGGCTTAAACGTGCTTCATTTCACTTTGGCTAATATGTTGCATTCCTTTGACATCTCAAATCCTTCGACCGACCCTGTTGATATGACTGAGTTCTTTGGATTTACCAACACCAGAGCTACTCCACTGGAGGTTTTGGTTAAACCACGTCTATCTCCAAACCGTTATCAAGCTTTGTAA 1608 0.4316 MDFLLNCLTLNTTTLIASFLSLIFLFFYLYRRICSEKRAPTVKGAWPILGHLSLLNGSKTPHRTLAALADKYGPLFTIKLGLKDALVLSNWEMSKELFTTNDLAVSSRPKLVAVEVMSYNQAFVGLAPYGPYWRELRKIVTVDFLSNRRIEQLSHIRISEIQTSFKELYDLCYTSVNNKKENESSYDAATLVDMKEWFEHLTFNIIVRMVVGKRYFGVAHVEGKEKAERFMKNLDEFMNLMSTFTVADGVPCLRWLDFGGHEKAMKATAEEMDKLLSEWLEEHREKNGLDGKVKGDQDFMDVMISALNGAPIHGFDADTICKATTLELILGGTDTTAFTLTWALSLLVRNPLAMEKAKEEIDMHIGKDGYIRESDISKLVYLQAIIKETLRLYPPAPLSSPRVFSENCILGGYHIRKGTRLMHNLWKIHRDPSVWSDPLEFKPERFLTTHQHVDLRGRHFELLPFGSGRRMCAGMSLGLNVLHFTLANMLHSFDISNPSTDPVDMTEFFGFTNTRATPLEVLVKPRLSPNRYQAL 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00196 535 CDD CYP82 73 526 - -
Vian8g00196 535 PRINTS E-class P450 group I signature 69 88 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vian8g00196 535 PRINTS E-class P450 group I signature 201 219 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vian8g00196 535 PRINTS E-class P450 group I signature 340 366 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vian8g00196 535 PRINTS E-class P450 group I signature 472 495 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vian8g00196 535 PRINTS E-class P450 group I signature 93 114 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vian8g00196 535 PRINTS E-class P450 group I signature 320 337 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vian8g00196 535 PRINTS E-class P450 group I signature 383 401 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vian8g00196 535 PRINTS E-class P450 group I signature 462 472 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vian8g00196 535 PRINTS E-class P450 group I signature 424 448 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vian8g00196 535 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 465 474 IPR017972 GO:0005506|GO:0016705
Vian8g00196 535 Gene3D Cytochrome P450 30 526 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vian8g00196 535 FunFam Cytochrome P450 82C4 31 524 - -
Vian8g00196 535 SUPERFAMILY Cytochrome P450 45 526 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vian8g00196 535 PANTHER CYTOCHROME P450 82C3-RELATED 20 532 - -
Vian8g00196 535 Pfam Cytochrome P450 42 512 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vian8g00196 535 PRINTS P450 superfamily signature 384 395 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vian8g00196 535 PRINTS P450 superfamily signature 331 348 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vian8g00196 535 PRINTS P450 superfamily signature 463 472 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vian8g00196 535 PRINTS P450 superfamily signature 472 483 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00196 Vian-Chr8 2679660 2681423 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00196 14 527 Cytochrome P450 AT4G31940 47.601 1.20e-172 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00196 - - gmx:100789386 856.284