Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00158 ATGTTGAAAATTACAGCAGTAGGTTGTTTGTATTTAGCAATATTTGTTGGAGTGCAATTTAAGTGTGGTGAGAGTTTGGGTGGTCTTCCTCCTGTTCTTCCGACCAAAGTAACAGTTCAAATAACAAATCGTTTAAGCATGAGATATTTGGCTGTTCAGTGCAAAGACAAGCACAGTGATCTTGGGGTGCATCAACTCAATGTTGGTGAAACATATAGTTTTCAGTTCTTTCCAAAATTTTATTTTCCTACCACATTGTACTTTTGCCATTTTGTTTGGTTGGAAGGAGATCATTATTTTGACATATATGACCAAGATCGAGATGGATACTGCAAAGGTAATACTTGTATTTGGGAGATATTTCCCACTGGACCATGCCGCACAAATAAAGATCCTCGACAATGTTATGGATGGAATCCACCCCCTGCAGTGCAACAAAGTAACAACACTTTACTTGCATGA 462 0.381 MLKITAVGCLYLAIFVGVQFKCGESLGGLPPVLPTKVTVQITNRLSMRYLAVQCKDKHSDLGVHQLNVGETYSFQFFPKFYFPTTLYFCHFVWLEGDHYFDIYDQDRDGYCKGNTCIWEIFPTGPCRTNKDPRQCYGWNPPPAVQQSNNTLLA 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00158 153 Pfam Plant self-incompatibility protein S1 38 138 IPR010264 -
Vian8g00158 153 PANTHER - 34 134 IPR010264 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00158 Vian-Chr8 1942688 1943149 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00158 36 139 Carbohydrate Esterase AT3G16970 39.823 9.15e-17 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00158 - - pvu:PHAVU_004G003100g 211.46