Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00142 ATGTTCCACATTGTTCACTCCCTCCCCTTAAAGCACCTCTCACTACCCTTCCACTCTTTTGTTCCTCGCATATTCATTGTTCCTTTGAACAGGAACTTTTCTTTCATTTTTCCAACTTCACTCTTTGTCAGATGCAACCACTCCAATATCGTGGAACCCTTCCCACCACTGCCTCAATATCCTTCGGTTGCAGAATTGTCGCAAAGGGTGTATGCAGATTACTCTGTTTATACAGCGAAGGGTGTGCTCACCTTGACTCCTAAACCTCCGGAATTTGAATCAAAAGCTTCTGGGGCGTTTGGGGTGTCTAGGGAAGGTTATATGTTGCTCCAGTTTGCTCCTTCGGTTGGTACTGAAGAATCCATATATGATTGGAACCAAAAGCAGGTGTTCTCACTTTCGGTAAGTGAAATGGGGACTCTAATTTGCCTTGGTGCAATGGAGTCTTGGGAATTTTCTCGTAAGACTGCTAAGGCAAAAAGCAATGGAATTGAAGTTAGAAAAGTTTTGAAGGTGGAGCCACTTCTGGATGCTACTAGTCACTCATTTAGCTTAAGTGTTTATAAAAAACCTGCCAACATGGAGGAAATTGAGGAAAACATCTATCTCCCTATTACAAGGGCGCAGCTAGCAGTTTTAAGGTCAATTTTCAATTATATCGTGCCGTACCTTCTAGGTTGGAATGCATTTGCAAGCACCATAAAGGCAGAGGTATATAGTCAAATGAACAGTGCCAACCCCAGATACAGTGCAAACAATGAATGGAGCAGATAA 774 0.4264 MFHIVHSLPLKHLSLPFHSFVPRIFIVPLNRNFSFIFPTSLFVRCNHSNIVEPFPPLPQYPSVAELSQRVYADYSVYTAKGVLTLTPKPPEFESKASGAFGVSREGYMLLQFAPSVGTEESIYDWNQKQVFSLSVSEMGTLICLGAMESWEFSRKTAKAKSNGIEVRKVLKVEPLLDATSHSFSLSVYKKPANMEEIEENIYLPITRAQLAVLRSIFNYIVPYLLGWNAFASTIKAEVYSQMNSANPRYSANNEWSR 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00142 257 Gene3D Transcriptional Coactivator Pc4; Chain A 63 245 IPR009044 GO:0003677|GO:0006355
Vian8g00142 257 Pfam Whirly transcription factor 76 216 IPR013742 GO:0003697|GO:0006355|GO:0006952
Vian8g00142 257 SUPERFAMILY ssDNA-binding transcriptional regulator domain 68 257 IPR009044 GO:0003677|GO:0006355
Vian8g00142 257 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 62 257 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00142 Vian-Chr8 1765413 1774197 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00142 61 257 Whirly Transcription Factor Family AT1G14410 53.030 8.84e-67 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Vian8g00142 Whirly 4.6e-41 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00142 K26559 - pvu:PHAVU_002G089800g 432.565