Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00120 ATGCTTCTATACGCAGCCATAATAGCATCATTCTTGTGCTCCCTATACTTCTTCCATCGCAGAAGATGTTGCAAACACCCCCTCTTGAGAGATTACCCCATCCTTGGAATGTTGCCACCACTGCTCTCCAACTTGTGGCGTGTTCATGATTTTTTCACGGAGGTGCTAACAAAACATGGTGGCACTGGGGAGTTCAAAGGACCATGGTTCACCGATATGAACTGTTTGGTCAGTTGTGACTCCCTCAACGTGAAACACATGTTGTGCAAGAACTTCGACAACTATGTCAAGGGACATGACTTTCGTGACATTTTCGAACCATTCGGAGATGGGTTTGTCACAGCCGATTCAGAGACATGGAAGTACTTCAGAACCGTTCTCCATTCTTTGATCAAACAAAGAAGGTTCGAAGTTTTTGTTGATCAAACAGTTCAGAAGAAAGTGTACACAAGCCTGCTTCCGATATTGGATCATGCACAACAACAAGGAAGAGTGGTGGATCTTCAGGATATCTTCAACCGATTCACATTCGATAACATATGCTCCACAATCGTAGGACACGATCCTAAGTGTCTTTCCATTGACTTTCCCGAAGTTGCGATCGAAAAGGCTTTTAATGAGTGTGAAGAGTCGATATTCTACAGACACGTAGTGCCGGGAAGTGTTTGGAAGCTCCAAAAATGGCTCCAAATTGGTCAAGAGAAGAAGATGACAGAGGCGTGCAGAACGTTTGACGATTTCATATATTCATGCATAGCGTCCAAGCGAGAAGAGTTAAGCAAGTGCAGCAGAGAAGAAATGGAGGAAGCTCCTTTTGACTTGCTTACTGCTTTGATCACAGAAGAGAGAGGACGTTTGCATGATGACAAGTTTCTAAGAGATGGTGCGTTTAACTTCTTTGTTGCAGGGAGAGAAACCATGACTTCAGCTCTTACGTGGTTCTTTTGGCTTATTGCTAAACACCCTTTAGTGGAAGCCAAGATTCTTGAAGAGATCAGAGATCATTTTAAGACAGATGAAAAGAAAACTGTTGACTGTGGATATCATGGTTTTCATGAGGACCCCCATAATCATAATCTTGATCAAGAACAGTATCTTAAGCAATCTGTATCTGGGGAAGTTTTAGGCATGCAAGAGGTGAAAAAGCTGGTTTATCTGCATGGTGCTTTGTGTGAAGCTCTGAGACTTTTCCCTCCAGTACCCATTGAACGGAAGCAAGCAGTTAAAGCCGACACTCTTCCAAGTGGGCATAGAGTAAATGGCAATACAATGATAATGTTTTCTCTGTATGCGATGGGAAGGTGTGAAGAGATATGGGGAAAAGATTGTTTGGAGTTCAAGCCAGAAAGATGGATATCTGAGAGAGGAGAAATAGTTTATGCACCAGCTTACAAATTCATTGCTTTTAATGCAGGACCAAGAATCTGTTTGGGAAAAGACTTGGCGTTTCTCCAAATGAAGATGGTGGCTGCTGCTATTTTGAGGAAGTACTGTTTCAAAGTGGAGGAAGGTCATATTGCAACTCCAACACATTCAATTGTTCTTCTAATGAAGAACGGTTTGAAGGCTAGGATAATGAAAAGAGAAGTTTGA 1593 0.4231 MLLYAAIIASFLCSLYFFHRRRCCKHPLLRDYPILGMLPPLLSNLWRVHDFFTEVLTKHGGTGEFKGPWFTDMNCLVSCDSLNVKHMLCKNFDNYVKGHDFRDIFEPFGDGFVTADSETWKYFRTVLHSLIKQRRFEVFVDQTVQKKVYTSLLPILDHAQQQGRVVDLQDIFNRFTFDNICSTIVGHDPKCLSIDFPEVAIEKAFNECEESIFYRHVVPGSVWKLQKWLQIGQEKKMTEACRTFDDFIYSCIASKREELSKCSREEMEEAPFDLLTALITEERGRLHDDKFLRDGAFNFFVAGRETMTSALTWFFWLIAKHPLVEAKILEEIRDHFKTDEKKTVDCGYHGFHEDPHNHNLDQEQYLKQSVSGEVLGMQEVKKLVYLHGALCEALRLFPPVPIERKQAVKADTLPSGHRVNGNTMIMFSLYAMGRCEEIWGKDCLEFKPERWISERGEIVYAPAYKFIAFNAGPRICLGKDLAFLQMKMVAAAILRKYCFKVEEGHIATPTHSIVLLMKNGLKARIMKREV 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00120 530 Pfam Cytochrome P450 47 517 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vian8g00120 530 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 469 478 IPR017972 GO:0005506|GO:0016705
Vian8g00120 530 CDD CYP86A 64 521 - -
Vian8g00120 530 PRINTS E-class P450 group I signature 291 308 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vian8g00120 530 PRINTS E-class P450 group I signature 311 337 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vian8g00120 530 PRINTS E-class P450 group I signature 476 499 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vian8g00120 530 PRINTS E-class P450 group I signature 466 476 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vian8g00120 530 SUPERFAMILY Cytochrome P450 16 528 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vian8g00120 530 Gene3D Cytochrome P450 16 530 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vian8g00120 530 PRINTS P450 superfamily signature 302 319 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vian8g00120 530 PRINTS P450 superfamily signature 476 487 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vian8g00120 530 PRINTS P450 superfamily signature 388 399 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vian8g00120 530 PRINTS P450 superfamily signature 467 476 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vian8g00120 530 PANTHER CYTOCHROME P450 21 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00120 Vian-Chr8 1562787 1564379 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00120 2 529 Cytochrome P450 AT2G23180 42.644 1.76e-152 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00120 - - var:108344605 1062.75