LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian8g00118	ATGGAAAAAGAGGTTGTGGAAAGTCTTTGGAATGGTGACGGAGAATCTCAAATTCAAGCAGCTTTGGAGCTTTGCAGATTAAGCAGTAAGCAGAGGCACAAGTTGGAAGAAAGTAGAGTCATGGTTCCTCTTATTTCCATGCTTCATTCTGAAAACTATGAAGCAATAGAAGCTGCTCTGTGTGCTTTGCTCAGTCTTTCCTTTGGCTCTGAGAGAAACAAGATTCGGATCATCAAATATGGAAGTTTGCCAGTTCTGCTGAGTCTCCTCCATTGTGATAGCCAGAGAGCAGCAGACTTGACTTTGGCAGCCATGCTTACTCTCTCTTCTTGCAAAGCAAATAAGGTAGCAATTGCTTCTTCTGGGGCTGTTCAAATCTTGGTTGGGTTTGTAAACAACAGCAATTATAGCACTCAGTCTCAGCTTGATGCTATTGCTACTCTGCAGAATCTTACAACGTGCAAAGAGATTGTTCCACTGATTGTGTCTTCTGGGGTTATGCTCTCCTTGCTTGAACTGATCCACACCTCAGTAAAATCATCTCCATTGGTTGAGAAAGCAATTGGGTTGCTAGAAAACCTTGTGTCTTCATCAGAGAGTGCATTATGTGAGGTTTCTAGTACTATTGGAGCAATCAGGATACTGGTTGAGACTATAGAAGATGGATCTTCACTGAGCAAAGAGTATGCAGTGTGTATACTTCTCCTTGTATGCCAGAGCTGCAGAGAGAAATATAGAGGGTTGATTTTGACAGAGGGAGTGATGCCAGGGTTGCTTCAGTTGAGTGTGGATGGAACATGGAGAGCCAAATCCATGGCTCGAGAACTGTTGTTGCTTCTGAGGGACTGCTCCAATTATAGCTCAAGATGTAAACAGATTGATCATGAGCTTATAGAAAGGATAATGGATGAAATTGAAGCAGAAGGAGAGGAATTGGCAGATACTACTTTGAGGCTGGTAGAGGAGATGATTGCAAAGCTCCATGCTTAA	990	0.4273	MEKEVVESLWNGDGESQIQAALELCRLSSKQRHKLEESRVMVPLISMLHSENYEAIEAALCALLSLSFGSERNKIRIIKYGSLPVLLSLLHCDSQRAADLTLAAMLTLSSCKANKVAIASSGAVQILVGFVNNSNYSTQSQLDAIATLQNLTTCKEIVPLIVSSGVMLSLLELIHTSVKSSPLVEKAIGLLENLVSSSESALCEVSSTIGAIRILVETIEDGSSLSKEYAVCILLLVCQSCREKYRGLILTEGVMPGLLQLSVDGTWRAKSMARELLLLLRDCSNYSSRCKQIDHELIERIMDEIEAEGEELADTTLRLVEEMIAKLHA	329

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian8g00118	329	FunFam	U-box domain-containing protein 4	202	318	-	-
	Vian8g00118	329	Gene3D	-	135	205	IPR011989	-
	Vian8g00118	329	SMART	arm_5	70	110	IPR000225	GO:0005515
	Vian8g00118	329	SMART	arm_5	28	68	IPR000225	GO:0005515
	Vian8g00118	329	SMART	arm_5	111	153	IPR000225	GO:0005515
	Vian8g00118	329	SMART	arm_5	154	196	IPR000225	GO:0005515
	Vian8g00118	329	Gene3D	-	3	134	IPR011989	-
	Vian8g00118	329	SUPERFAMILY	ARM repeat	4	312	IPR016024	-
	Vian8g00118	329	ProSiteProfiles	Armadillo/plakoglobin ARM repeat profile.	165	200	IPR000225	GO:0005515
	Vian8g00118	329	ProSiteProfiles	Armadillo/plakoglobin ARM repeat profile.	122	166	IPR000225	GO:0005515

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian8g00118	Vian-Chr8	1547211	1548651	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian8g00118	4	282	U-box Gene Family	AT3G54790	33.216	1.77e-28	114

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian8g00118	-		-	gmx:100778534	518.464

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