Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00118 ATGGAAAAAGAGGTTGTGGAAAGTCTTTGGAATGGTGACGGAGAATCTCAAATTCAAGCAGCTTTGGAGCTTTGCAGATTAAGCAGTAAGCAGAGGCACAAGTTGGAAGAAAGTAGAGTCATGGTTCCTCTTATTTCCATGCTTCATTCTGAAAACTATGAAGCAATAGAAGCTGCTCTGTGTGCTTTGCTCAGTCTTTCCTTTGGCTCTGAGAGAAACAAGATTCGGATCATCAAATATGGAAGTTTGCCAGTTCTGCTGAGTCTCCTCCATTGTGATAGCCAGAGAGCAGCAGACTTGACTTTGGCAGCCATGCTTACTCTCTCTTCTTGCAAAGCAAATAAGGTAGCAATTGCTTCTTCTGGGGCTGTTCAAATCTTGGTTGGGTTTGTAAACAACAGCAATTATAGCACTCAGTCTCAGCTTGATGCTATTGCTACTCTGCAGAATCTTACAACGTGCAAAGAGATTGTTCCACTGATTGTGTCTTCTGGGGTTATGCTCTCCTTGCTTGAACTGATCCACACCTCAGTAAAATCATCTCCATTGGTTGAGAAAGCAATTGGGTTGCTAGAAAACCTTGTGTCTTCATCAGAGAGTGCATTATGTGAGGTTTCTAGTACTATTGGAGCAATCAGGATACTGGTTGAGACTATAGAAGATGGATCTTCACTGAGCAAAGAGTATGCAGTGTGTATACTTCTCCTTGTATGCCAGAGCTGCAGAGAGAAATATAGAGGGTTGATTTTGACAGAGGGAGTGATGCCAGGGTTGCTTCAGTTGAGTGTGGATGGAACATGGAGAGCCAAATCCATGGCTCGAGAACTGTTGTTGCTTCTGAGGGACTGCTCCAATTATAGCTCAAGATGTAAACAGATTGATCATGAGCTTATAGAAAGGATAATGGATGAAATTGAAGCAGAAGGAGAGGAATTGGCAGATACTACTTTGAGGCTGGTAGAGGAGATGATTGCAAAGCTCCATGCTTAA 990 0.4273 MEKEVVESLWNGDGESQIQAALELCRLSSKQRHKLEESRVMVPLISMLHSENYEAIEAALCALLSLSFGSERNKIRIIKYGSLPVLLSLLHCDSQRAADLTLAAMLTLSSCKANKVAIASSGAVQILVGFVNNSNYSTQSQLDAIATLQNLTTCKEIVPLIVSSGVMLSLLELIHTSVKSSPLVEKAIGLLENLVSSSESALCEVSSTIGAIRILVETIEDGSSLSKEYAVCILLLVCQSCREKYRGLILTEGVMPGLLQLSVDGTWRAKSMARELLLLLRDCSNYSSRCKQIDHELIERIMDEIEAEGEELADTTLRLVEEMIAKLHA 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00118 329 FunFam U-box domain-containing protein 4 202 318 - -
Vian8g00118 329 Gene3D - 135 205 IPR011989 -
Vian8g00118 329 SMART arm_5 70 110 IPR000225 GO:0005515
Vian8g00118 329 SMART arm_5 28 68 IPR000225 GO:0005515
Vian8g00118 329 SMART arm_5 111 153 IPR000225 GO:0005515
Vian8g00118 329 SMART arm_5 154 196 IPR000225 GO:0005515
Vian8g00118 329 Gene3D - 3 134 IPR011989 -
Vian8g00118 329 SUPERFAMILY ARM repeat 4 312 IPR016024 -
Vian8g00118 329 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 165 200 IPR000225 GO:0005515
Vian8g00118 329 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 122 166 IPR000225 GO:0005515
Vian8g00118 329 FunFam U-box domain-containing protein 4 3 198 - -
Vian8g00118 329 Gene3D - 206 315 IPR011989 -
Vian8g00118 329 PANTHER U BOX DOMAIN-CONTAINING 4 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00118 Vian-Chr8 1547211 1548651 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00118 4 282 U-box Gene Family AT3G54790 33.216 1.77e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00118 - - gmx:100778534 518.464