Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00114 ATGGAATCTCCCGGTAACGAGCATGTGGTGGATGCCGCTGACCCCAACGACGTCGTTACACCTTTCTCCCACAGAGAAGAACCCCACAATTCCCAACCCCTCACCGGCGACGGTGCTAGTCCCGGAAAGATATTTATAGGTGGTTTAGCGAGAGAAACGACCATTGCTCAATTTATCAAGCACTTTGGGAAATATGGTGAGATCACGGATTCGGTCATCATGAAGGACAGGAAAACTGGGCAACCTCGCGGATTCGGGTTTATAACGTACGCCGATCCCTCGGTGGTTGATAAAGTCATTGAGGATCCTCACGTCATCAATGGAAAACAAGTTGAGATTAAGCGGACGATACCAAGGGGAGCTGTTGGCTCTAAGGATTTTAGGACAAAGAAAATTTTTGTAGGTGGAATTCCTTCAAATGTGACTGAAGATGAATTCAGAGACTTCTTTACTCGCTATGGTGAAGTAAAAGATCACCAAATAATGCGGGACCACTCCACCAACAGATCTCGTGGCTTTGGGTTTATAACATTTGATTCTGAAGAAGCAGTTGATGATCTTCTATCCATGGGGAACAAAATTGAATTTGCTGGAGCTCAGGTGGAAATCAAGAAGGCTGAACCAAAGAAGCCAAACTCGGCACCTCCATCATCCAAGCGCTACAATGACTCAAGATCTTCATACGGTGGTGCTGGATATGGAGATGCCTATGATGGATTTGGTGGCAATTTTGGAGTTGGGGGTGGTTATAGATCAGGTGGTGCTTATGGTGGCGGTAGGGGTGGTGCTTATGGTGCCTATGGAAGTGAATTTGGTGGTTATGGAGGATATGCTGGTGCGATGGGACCATACAGAGGAGATCCCTCCCTCGGTTATGCTGGTCGATATGGTGGAAGCTTTAGTAGAGGGTATGATCTTGGTGGGTATGGTGGACCTAGTGAGAATTATGGGGCATATGGTGGGGGTGGTGGTTCTTCTGGTGGTGCTGGTGCCGGTGCCTATCAAAGTGGCTATGATGGCAGCCTAGGAGGTGGATATGGAGGGACTAGTGGGGGTCCCTTCTATGGGAGCAGTAGAGGTGGTTATGGTGCTGGCCGATACCATCCTTATGGAAGATAA 1119 0.4817 MESPGNEHVVDAADPNDVVTPFSHREEPHNSQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDPHVINGKQVEIKRTIPRGAVGSKDFRTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFITFDSEEAVDDLLSMGNKIEFAGAQVEIKKAEPKKPNSAPPSSKRYNDSRSSYGGAGYGDAYDGFGGNFGVGGGYRSGGAYGGGRGGAYGAYGSEFGGYGGYAGAMGPYRGDPSLGYAGRYGGSFSRGYDLGGYGGPSENYGAYGGGGGSSGGAGAGAYQSGYDGSLGGGYGGTSGGPFYGSSRGGYGAGRYHPYGR 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00114 372 MobiDBLite consensus disorder prediction 205 226 - -
Vian8g00114 372 Gene3D - 42 121 IPR012677 -
Vian8g00114 372 MobiDBLite consensus disorder prediction 353 372 - -
Vian8g00114 372 SUPERFAMILY RNA-binding domain, RBD 32 120 IPR035979 GO:0003676
Vian8g00114 372 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 118 IPR000504 GO:0003723
Vian8g00114 372 SMART rrm1_1 131 204 IPR000504 GO:0003723
Vian8g00114 372 SMART rrm1_1 43 114 IPR000504 GO:0003723
Vian8g00114 372 FunFam Heterogeneous nuclear ribonucleoprotein 1 123 244 - -
Vian8g00114 372 Gene3D - 124 237 IPR012677 -
Vian8g00114 372 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 31 372 - -
Vian8g00114 372 SUPERFAMILY RNA-binding domain, RBD 128 234 IPR035979 GO:0003676
Vian8g00114 372 FunFam Heterogeneous nuclear ribonucleoprotein 1 41 122 - -
Vian8g00114 372 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 110 IPR000504 GO:0003723
Vian8g00114 372 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 132 200 IPR000504 GO:0003723
Vian8g00114 372 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 130 208 IPR000504 GO:0003723
Vian8g00114 372 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00114 Vian-Chr8 1509342 1512963 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00114 42 198 Eukaryotic Initiation Factors Gene Family AT1G71770 27.168 1.09e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00114 K12741 - gmx:100793209 553.132