Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00109 ATGAATCACAGAGATTATACTGTTCTAATGGTTATGCTGTTGGCTTCAATAGGGATTAAATATGGAGGTTCAAACACCAATCCCTTCCAATATTCAACTCCAACTGTGTTGCTTTTCCTCACAGCAATATGTTCTCACGTACTTGTTTCCACAGTTCAAACCACCTGTCCAACTAATTTCATATTCAACGTCTCTGGTGTAGTTGGATGTGAAGCACTGCTGTGGATTCTCATTGCTCCTGAGTTTTTATGGTGGTATATCATCAACATCCTTCTTTTACTTGTCGCCTCATTCTGCTTCAACTACAACCCACTTAACGGTCTCTCCCTCACTCTCGCCACCCCTCCCTCCACCTTCTCCCACCGTCTCACCCCGTCATGCTGGACCCCGGAGGAAACCTCTGCCCTCATCGACGCCTACCGTGACAAGTGGTACTCCCTCGGCCGCACAAACCTCAAAGCCACCCACTGGCAAGAGGTCGCCGATGCCGTCACTGCCCAGTGCCCCAACGCTTCCGCCACTGCCAAAACCGCCGTCCAGTGCCGCCACAAAATGGAAAAACTCCGCAAACGGTACCGCACCGAAATCCAATGCCTCCGCTCCCTCCCTCTCCCTCGCCTCATCAACAACTCCACCACCGCTTCACCCTCCTCCTGGGTTCACTTCAAATCCATGGATTCCATGGAAAAAGGCCCCAACAAACCCCACACCGACACCACCACCGCCACCAACCCCAACACCCCCACCAACAACCTCAATTTCCCCGACGAATTCCAACAACCTCAATTTCCCCGACGAATTCCAACTCAATCTCTAACGCAATCTAATCTCGTGGGTTCATCTTTAACGCAATCTAATCTCGTGGCTCCATCCCCTCCTAGATCTACTCTCTAA 894 0.5089 MNHRDYTVLMVMLLASIGIKYGGSNTNPFQYSTPTVLLFLTAICSHVLVSTVQTTCPTNFIFNVSGVVGCEALLWILIAPEFLWWYIINILLLLVASFCFNYNPLNGLSLTLATPPSTFSHRLTPSCWTPEETSALIDAYRDKWYSLGRTNLKATHWQEVADAVTAQCPNASATAKTAVQCRHKMEKLRKRYRTEIQCLRSLPLPRLINNSTTASPSSWVHFKSMDSMEKGPNKPHTDTTTATNPNTPTNNLNFPDEFQQPQFPRRIPTQSLTQSNLVGSSLTQSNLVAPSPPRSTL 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00109 297 ProSiteProfiles Myb-like domain profile. 128 189 IPR001005 -
Vian8g00109 297 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 121 259 IPR044823 -
Vian8g00109 297 FunFam Trihelix transcription factor ASIL2 128 194 - -
Vian8g00109 297 Pfam Myb/SANT-like DNA-binding domain 126 228 IPR044822 -
Vian8g00109 297 SMART 118neu2 135 233 IPR006578 -
Vian8g00109 297 MobiDBLite consensus disorder prediction 224 262 - -
Vian8g00109 297 Gene3D - 128 194 - -
Vian8g00109 297 MobiDBLite consensus disorder prediction 234 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00109 Vian-Chr8 1446289 1448762 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00109 126 228 Trihelix Transcription Factor Family AT3G14180 31.068 1.98e-12 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vian8g00109 Myb_DNA-bind_4 6.8e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00109 - - vum:124841341 281.182