Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00101 ATGATGGCTTCTTCTAGCTACTCGAATTCTCCATGTGCAGCGTGCAAGTTTCTGAGGAGAAAGTGCATGCCAGACTGCATTTTTGCGCCATATTTTCCTCCAGAGGAGCCTCAGAAGTTTGCAAACGTGCACAAGATCTTTGGTGCAAGCAACGTGAGCAAGATTCTGAACGAGGTGCAACCCTATCAGAGAGAAGATGCTGTGAACTCTCTGGCATACGAAGCAGAAGCAAGGATCAAAGATCCTGTGTATGGTTGTGTTGGTGCCATTTCAGTGCTGCAAAGGCAAGTTCTCAAGCTCCAAAAGGAGCTTGATGCTACAAATGCTGATTTGATCCGCTACAGCACTTGCAGTGAAATGCCAAACAGTAGTAGCAGTAGTCGTCTTCATCATGGAGGAAGAAGCAAGATGAGTAGTGATGATGGTGGTGGTGGTGATGGTGGTTCTTCACATGGTTTAAGCTTCTATTATTCTTCTGCTAATTGGAACAATGATCATTCTGAAAATGGCTACCCCAGAGGAGATATATAA 531 0.4482 MMASSSYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKILNEVQPYQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVLKLQKELDATNADLIRYSTCSEMPNSSSSSRLHHGGRSKMSSDDGGGGDGGSSHGLSFYYSSANWNNDHSENGYPRGDI 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00101 176 Coils Coil 90 110 - -
Vian8g00101 176 MobiDBLite consensus disorder prediction 118 132 - -
Vian8g00101 176 Pfam Lateral organ boundaries (LOB) domain 11 107 IPR004883 -
Vian8g00101 176 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 129 - -
Vian8g00101 176 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Vian8g00101 176 MobiDBLite consensus disorder prediction 118 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00101 Vian-Chr8 1367395 1367925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00101 5 134 AS2 family AT3G27650 76.154 8.36e-71 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vian8g00101 LOB 2.5e-42 No_clan