Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00100 ATGTCTGGATTGGAGGAATTGAGGAAAAAGCTTGCACCTTTATTCGACGCCGAGAAGGGTTTCTCGTCAAGTTCAACCTTGGATCCCTGTGATTCTTACACATTTTCGGATGGTGGAACAGTGAACTTGTTGAGTAGATCATATGGGGTTTACAATATCAACGAACTTGGGTTGCAGAAGTGCACATCATCAAGGTCTTTGGATGAAACTGATCACAGTGAGAAAACGTATAAGTGTGCTTCCCAAGAAATGAGGATATTTGGAGCAATTGGTAGTGGTGCCAGTAGTGTTGTGCAGAGAGCCATGCATATACCGACACATAGGATTCTGGCATTGAAGAAGATCAATATCTTTGAGAAGGAGAAAAGGCAGCAGCTCCTTACTGAGATAAGGACATTGTGTGAAGCACCTTGTTATGAGGGTCTTGTAGAATTTCACGGAGCATTTTACACCCCAGATTCCGGGCAGATAAGCATAGCTTTGGAGTATATGGATGGAGGATCACTTGCAGACATCTTGAGAATGCATAGAAGGATACCAGAACCTATTCTATCCTTCATGTTTCAGAAGCTACTACATGGTCTAAGCTATCTGCATGGAGTAAGACATCTTGTTCACAGAGACATAAAGCCTGCCAATCTATTAGTAAATTTGAAAGGAGAGCCAAAAATTACCGACTTTGGTATTAGTGCCGGCTTAGAGAATTCAGTGGCAATGTGTGCTACTTTTGTTGGAACTGTTACATACATGTCACCTGAGAGGATTCGAAATGAAAGCTATTCTTATCCGGCTGATATTTGGAGCCTTGGGCTTGCTCTTTTAGAGTGTGGGACTGGAGAATTCCCATATACAGCTAATGAAGGCCCTGTCAATCTTATGTTGCAGATTCTGGATGATCCATCACCATCACCATCAAAAAACAAGTTTTCACCAGAATTCTGCTCCTTTGTTGATGCTTGCCTGCAAAAGGATCCAGACACTAGGCCAACAGCAGAGCAGCTGCTTTTGCACCCTTTTATCAAAAAGTATGAGAATGACAAGGTAGATTTAGCCGGATTTGTTCGAAGCGTATTCGATCCTACACAAAGAATGAAGGACTTGGCAGACATGTTGACAATACATTACTACTTGCTATTTGATGGACCTGATGATCTGTGGCAACATACAAGAAACTTATACAGTGAAAGCTCGATTTTCAGTAGTTTCTCTGGAAAACAACATTGTGGTCCAAGTAACATCTTTACATCTCTATCAAGTATTAGAGCCACACTGGTTGGTGAGTGGCCTCCTGAAAAGTTGGTGCATGTTGTTGAGAAGCTTCAATGCCGTGCTCATGGTGAAGATGGAGTGGCAATCAGAGTTTCAGGATCTTTTATAATTGGAAACCAGTTCCTCATATGTGGAGATGGCATTCAAGTAGAGGGGTTGCCAAACTTCAAGGATCTTGGAATTGATATTGCTACCAAAAGAATGGGCACATTTCATGAACAATTCTTAGTGGAACCAACAGGTCTTATAGGATGCTATTCCATTGTGAAACAAGAGCTATACATTAATCAGTAA 1563 0.4152 MSGLEELRKKLAPLFDAEKGFSSSSTLDPCDSYTFSDGGTVNLLSRSYGVYNINELGLQKCTSSRSLDETDHSEKTYKCASQEMRIFGAIGSGASSVVQRAMHIPTHRILALKKINIFEKEKRQQLLTEIRTLCEAPCYEGLVEFHGAFYTPDSGQISIALEYMDGGSLADILRMHRRIPEPILSFMFQKLLHGLSYLHGVRHLVHRDIKPANLLVNLKGEPKITDFGISAGLENSVAMCATFVGTVTYMSPERIRNESYSYPADIWSLGLALLECGTGEFPYTANEGPVNLMLQILDDPSPSPSKNKFSPEFCSFVDACLQKDPDTRPTAEQLLLHPFIKKYENDKVDLAGFVRSVFDPTQRMKDLADMLTIHYYLLFDGPDDLWQHTRNLYSESSIFSSFSGKQHCGPSNIFTSLSSIRATLVGEWPPEKLVHVVEKLQCRAHGEDGVAIRVSGSFIIGNQFLICGDGIQVEGLPNFKDLGIDIATKRMGTFHEQFLVEPTGLIGCYSIVKQELYINQ 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00100 520 ProSitePatterns Protein kinases ATP-binding region signature. 90 113 IPR017441 GO:0005524
Vian8g00100 520 SMART serkin_6 84 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian8g00100 520 CDD PKc_MAPKK_plant_like 85 345 - -
Vian8g00100 520 Pfam Protein kinase domain 88 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian8g00100 520 Gene3D - 359 518 - -
Vian8g00100 520 Gene3D Phosphorylase Kinase; domain 1 76 159 - -
Vian8g00100 520 FunFam mitogen-activated protein kinase kinase 3 56 165 - -
Vian8g00100 520 ProSiteProfiles Protein kinase domain profile. 84 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian8g00100 520 ProSiteProfiles Nuclear transport factor 2 domain profile. 367 518 IPR018222 -
Vian8g00100 520 FunFam mitogen-activated protein kinase kinase 3 166 362 - -
Vian8g00100 520 FunFam Mitogen-activated protein kinase kinase 3 364 519 - -
Vian8g00100 520 SUPERFAMILY NTF2-like 365 463 IPR032710 -
Vian8g00100 520 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 23 398 - -
Vian8g00100 520 SUPERFAMILY Protein kinase-like (PK-like) 86 393 IPR011009 -
Vian8g00100 520 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Vian8g00100 520 Gene3D Transferase(Phosphotransferase) domain 1 160 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00100 Vian-Chr8 1354649 1358190 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00100 30 520 MAP Kinase Kinase Gene Family AT5G40440 77.800 0.0 806
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Vian8g00100 Pkinase 5.2e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00100 K20607 - gmx:100784935 979.933