Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00099 ATGTTCCCTCTCATTCATGGCGCCCAAACTCTACCATCAAATATAGTTCTTCTTCTTCCCTCCTTTTTCCTTCTCTCCCAAACCCAAATCAAATCCCTAATCCCTAATCTCTTTCTTCTTCAGTTATTCGTCTTCTTCCTCTCTCAATGGCCATGGACGCTCGAAGCTCTAACTCTCTCTTCACTCACATCGCCTCCAGAGAACTCTTCCGAGCACAATGCCGAAGACACCATTCCCCTCTCTCTCTCCTTCGGCAAGTGTTTGCGACCGCGGTTTTTGCCACGTCGTCACAGTTTCTTGAAGCAACTTCGTCACCAGATGCTTTGGTCTGTGATTTATTACGACGTTGACTGCAGTATCAAGGTTTCTGAAGTCATTGCGATTGTGATTGCGGATGTTCCAGTTGCATTTGTTTTTAAAGTCACAGTGATTGCCATTGATGCGTTCATCCGCAGTTTGTTGGGAGTGACTGCTGTAATTGAGTGCGCTGTTGAGGTTTTAGAAATCACTGTGATTGTAATTGCAGCTCCATTGGCTTCATTTACTACGAAATTTGCACACATTCTTGCTGTGTCTGATGAAGACGGTTATGTTAGCTTGTTTGATACTCGTCGCAAATGCCCTCTTACCTCAAACTTTGAAGAAAACAGAGAAGAAGAGAAGATCTGCGATTGGGTTTCGCATCAGAATGCTGTTTTTGATACTTGTTGGATTAAGGAGGATATGCAGATTCTCACTGCGTCCGGTGATCAAACAATAAAATTATGGGATGTTCAAGAACAAAAGTGTCTTGGAGTGTTGATCGGGCACACGGGAAGTGTGAAATCTATGTGTCCCCATCCAACTAATGCAGATATTATTGTCTCTGGTTCTAGAGATGGATCCTTTCGTATTTGGGACTTGAGATGCAAGTCCACTGCTAAGGGTAGACGGGGAGAAGTTAGCATATGTTCAATGGGTGGCGTCAACGGAGCACATGTTTCATCTCAAACACGACGAACAAGAAGGGGAAAGGCCGCTTCCATGAGCATTACGTCTGTTCTTTGTCTCAAGGACCAGGTTTCCGTAGCAAGTGCTGGAGCAGTGGATAGCGTGTTGAAGTTTTGGGATACTAGAAATTTGAAAAATAGTGTTACTCAGACGTGTCCATGTCCTCAGTCAATTGAAAAGCAAAGTTTGCACGGAATATCTAGTTTGTCCCAAGATGAAAGTGGACTTTTTCTTTCGGCTTCCTGCATGGATAACCGAATTTATTTGTACAACACCCTTCAACTTGAAAAAGGGCCTGTAAAATCTTTTTCTGGGTGCCGAATTGAATCATTTTTTGTAAAGTCTGCAATTAGCCCTGATGCGACAAACATTGTCAGTGGTTCTAGTGATGGAAACGCCTATGTTTGGAAGGTTGACAAGCCTCTGGAAGATCCTACTATTTTGAAAACTCACGATGGTGAAGTTACAGCAGTTAACTGGTGTAGCTTCGAAATTGGCAAATTCGCAACTTGTTCTGATGACTTTACAGTTCGGATATGGAATAAAAACAGTTACGTCTCTAGAACACAATGTGCATCTGCGGTTCGGAGAAGAGTAATGGCAATTCCTAGTACAGAGTGCAAAATCCTTTTAAATAATGGCAAAAGGTACTCTAAAACAGACGAAGATGCTTTCTTACCCGATCATAAACTACATCCAATTTCCTCACCCACTCCAATCACACCACCTAAAGTGAACTTATCTGAAGGCCACACGAACCAACTTTCCTCCTCAGGATTTGATCCTAATGCAGCTTCTCAAAAAACTCCTGAATCTGCTTTGAAGAGCCCCTCATCTGTATTGAATCCTCCATCCTCTTTAAAAAGAACTATCCGAGACTACTTTTCAGCATCTCCAAGAACCTTGTAG 1899 0.4271 MFPLIHGAQTLPSNIVLLLPSFFLLSQTQIKSLIPNLFLLQLFVFFLSQWPWTLEALTLSSLTSPPENSSEHNAEDTIPLSLSFGKCLRPRFLPRRHSFLKQLRHQMLWSVIYYDVDCSIKVSEVIAIVIADVPVAFVFKVTVIAIDAFIRSLLGVTAVIECAVEVLEITVIVIAAPLASFTTKFAHILAVSDEDGYVSLFDTRRKCPLTSNFEENREEEKICDWVSHQNAVFDTCWIKEDMQILTASGDQTIKLWDVQEQKCLGVLIGHTGSVKSMCPHPTNADIIVSGSRDGSFRIWDLRCKSTAKGRRGEVSICSMGGVNGAHVSSQTRRTRRGKAASMSITSVLCLKDQVSVASAGAVDSVLKFWDTRNLKNSVTQTCPCPQSIEKQSLHGISSLSQDESGLFLSASCMDNRIYLYNTLQLEKGPVKSFSGCRIESFFVKSAISPDATNIVSGSSDGNAYVWKVDKPLEDPTILKTHDGEVTAVNWCSFEIGKFATCSDDFTVRIWNKNSYVSRTQCASAVRRRVMAIPSTECKILLNNGKRYSKTDEDAFLPDHKLHPISSPTPITPPKVNLSEGHTNQLSSSGFDPNAASQKTPESALKSPSSVLNPPSSLKRTIRDYFSASPRTL 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00099 632 Gene3D - 176 308 IPR015943 GO:0005515
Vian8g00099 632 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 225 259 - -
Vian8g00099 632 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 267 302 - -
Vian8g00099 632 MobiDBLite consensus disorder prediction 571 621 - -
Vian8g00099 632 ProSiteProfiles Trp-Asp (WD) repeats profile. 446 469 IPR001680 GO:0005515
Vian8g00099 632 Pfam WD domain, G-beta repeat 262 300 IPR001680 GO:0005515
Vian8g00099 632 Pfam WD domain, G-beta repeat 477 511 IPR001680 GO:0005515
Vian8g00099 632 PANTHER LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN 180 629 - -
Vian8g00099 632 SUPERFAMILY WD40 repeat-like 187 515 IPR036322 GO:0005515
Vian8g00099 632 ProSiteProfiles Trp-Asp (WD) repeats profile. 267 302 IPR001680 GO:0005515
Vian8g00099 632 MobiDBLite consensus disorder prediction 558 621 - -
Vian8g00099 632 Gene3D - 309 542 IPR015943 GO:0005515
Vian8g00099 632 PRINTS G protein beta WD-40 repeat signature 454 468 IPR020472 -
Vian8g00099 632 PRINTS G protein beta WD-40 repeat signature 287 301 IPR020472 -
Vian8g00099 632 PRINTS G protein beta WD-40 repeat signature 244 258 IPR020472 -
Vian8g00099 632 ProSitePatterns Trp-Asp (WD) repeats signature. 244 258 IPR019775 -
Vian8g00099 632 ProSiteProfiles Trp-Asp (WD) repeats profile. 478 511 IPR001680 GO:0005515
Vian8g00099 632 ProSiteProfiles Trp-Asp (WD) repeats profile. 225 266 IPR001680 GO:0005515
Vian8g00099 632 SMART WD40_4 218 257 IPR001680 GO:0005515
Vian8g00099 632 SMART WD40_4 471 511 IPR001680 GO:0005515
Vian8g00099 632 SMART WD40_4 330 370 IPR001680 GO:0005515
Vian8g00099 632 SMART WD40_4 386 421 IPR001680 GO:0005515
Vian8g00099 632 SMART WD40_4 260 300 IPR001680 GO:0005515
Vian8g00099 632 SMART WD40_4 426 467 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00099 Vian-Chr8 1349203 1353399 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00099 227 476 U-box Gene Family AT1G04510 23.723 8.25e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00099 K11790 - gmx:100775857 768.844