Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00085 ATGATGAGTGAATTTCACTGGGACAATAATCAAAATGCAAAGCTCAAAAATGATACCAACATTGCTAATCATAACATAATCAAAGGGCAATGGACTCCTGAAGAAGATAGAGCTCTTATGGAATTGGTGAGTCAATTCGGACCCAAGAAATGGACACAAATTGCGAGATCACTACATGGCAGAATTGGGAAGCAATGTCGAGAAAGATGGAAAAACCATCTTCAGCCAAACATTAGGAAAGGATCATGGAGCTTGGAGGAAGACATGATTTTGATCAAAGGGCACCAAGAATTTGGAAGAAAATGGTCAAAGATTGCAAAGAGATTGAGTGGTAGGACTGAGAATGATATCAAGAACCGGTGGAATGCAACCATCCGACGCCAAAACTGCAACAAGAACAGTAAAGCTCACTACAAAGGCTCAATCCTCCATGCCTATGTTAAATGGGTCACTGCAACTGAAGACAAAGTTCTCAGAAAACCCTCAGACAAGAAGAACCAAAATGTGTTTGGATGCACTTGTGATGAGCTAGCTCTTTTGTTGAGCTAG 549 0.408 MMSEFHWDNNQNAKLKNDTNIANHNIIKGQWTPEEDRALMELVSQFGPKKWTQIARSLHGRIGKQCRERWKNHLQPNIRKGSWSLEEDMILIKGHQEFGRKWSKIAKRLSGRTENDIKNRWNATIRRQNCNKNSKAHYKGSILHAYVKWVTATEDKVLRKPSDKKNQNVFGCTCDELALLLS 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00085 182 Pfam Myb-like DNA-binding domain 31 88 - -
Vian8g00085 182 Gene3D - 81 142 - -
Vian8g00085 182 PANTHER MYB PROTEIN-RELATED 28 137 - -
Vian8g00085 182 ProSiteProfiles Myb-like domain profile. 23 74 IPR001005 -
Vian8g00085 182 CDD SANT 82 122 IPR001005 -
Vian8g00085 182 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 129 IPR017930 -
Vian8g00085 182 CDD SANT 31 74 IPR001005 -
Vian8g00085 182 SUPERFAMILY Homeodomain-like 25 121 IPR009057 -
Vian8g00085 182 Gene3D - 27 79 - -
Vian8g00085 182 ProSiteProfiles Myb-like domain profile. 75 125 IPR001005 -
Vian8g00085 182 SMART sant 79 127 IPR001005 -
Vian8g00085 182 SMART sant 27 76 IPR001005 -
Vian8g00085 182 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 23 78 IPR017930 -
Vian8g00085 182 FunFam Transcriptional activator Myb isoform A 27 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00085 Vian-Chr8 1196607 1197917 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00085 26 148 MYB Transcription Factor Family AT4G18770 58.065 8.47e-47 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian8g00085 Myb_DNA-bind_6 1.3e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00085 K09422 - vra:111242362 363.229