Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00084 ATGGAGTTTGATCCAAGCTTCCAAGGGCAACTACAACACCCATTCCTTTCAACTCATTTCCCCACAAACCCTAACATGATGCCACAAATCCAAACCATGTTTCCCTCACAAAGCCCTATTCTGATTCCATCATCACCACCACCACCCATCATGTTTCATCCCAACAACACTTTCCACCATATTCAAGATCACACCTTTGGGATACCTACCCAAAACCCTAACTTTTTGTTTGAGGGTCCTTTAAAACCCACCACAACTCCTTTTTGTGGGATGTTAACACCTTCTTTAGGGTCTTCCCTAGGAGGTTTTGCCAATGTTTCCCATCACCACCCTATGATGTTGCCACCACCAAACAACAACAATGCTTTGCATGGCCAACATGAAGGCAAAGTCATATGGGATTTCTCTCAAAAAACCATGATTCATCCATCTTATGCTTCTTCTTCTTCCAACTCACCTTCACCTCTTTCTTTTCCTAATATTACTCAATACAAATGGAAAAGTAATCAAAAGATAAAGATGAAAAAAGATACTAATGATCTCATAATCAAAGGGTGGTGGACTCCTGAAGAAGACAGTCTTGTGGAATTGGTGAATGAATTTGGGTTGAAGAAATGGACCCAAATTGCAAAATTTCTACCCGGAAGGATTGGGAAGCAATGTCGAGAAAGATGGTACAACCATCTTCAGCCAAACATTAAGAAGGAATCATGGAACCTGGAAGAAGACATGATTCTGATGAAAGTTCACCAAGAAATTGGAAACAAATGGTCTGAAATTGCAAAAAGATTACCTGGGAGAACTGAGAACAACATAAAAAACCATTGGAATGGTATCAAGCGTCGGCAAGACTATAAAAGGAACAACAACAAGAACAATGACAACCCTAATCACGATGAATCAATGCTCCATGCATACATCAAAAGGGTCACTGTTACTGAAGAAGCTGCAAGAGTTCAGAAGAAATCTGTCAGCAAGAATAATAAGAAGGATCAATGTTCATATAACATGCTTGATGGAAATAGCAATTTAGCTAGGAATGTGGGTATATGA 1053 0.396 MEFDPSFQGQLQHPFLSTHFPTNPNMMPQIQTMFPSQSPILIPSSPPPPIMFHPNNTFHHIQDHTFGIPTQNPNFLFEGPLKPTTTPFCGMLTPSLGSSLGGFANVSHHHPMMLPPPNNNNALHGQHEGKVIWDFSQKTMIHPSYASSSSNSPSPLSFPNITQYKWKSNQKIKMKKDTNDLIIKGWWTPEEDSLVELVNEFGLKKWTQIAKFLPGRIGKQCRERWYNHLQPNIKKESWNLEEDMILMKVHQEIGNKWSEIAKRLPGRTENNIKNHWNGIKRRQDYKRNNNKNNDNPNHDESMLHAYIKRVTVTEEAARVQKKSVSKNNKKDQCSYNMLDGNSNLARNVGI 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00084 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 230 284 IPR017930 -
Vian8g00084 350 ProSiteProfiles Myb-like domain profile. 230 280 IPR001005 -
Vian8g00084 350 ProSiteProfiles Myb-like domain profile. 186 229 IPR001005 -
Vian8g00084 350 PANTHER MYB PROTEIN-RELATED 155 299 - -
Vian8g00084 350 SMART sant 183 231 IPR001005 -
Vian8g00084 350 SMART sant 234 282 IPR001005 -
Vian8g00084 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 179 229 IPR017930 -
Vian8g00084 350 CDD SANT 237 280 IPR001005 -
Vian8g00084 350 MobiDBLite consensus disorder prediction 278 301 - -
Vian8g00084 350 FunFam Transcriptional activator Myb isoform A 183 235 - -
Vian8g00084 350 Pfam Myb-like DNA-binding domain 185 229 IPR001005 -
Vian8g00084 350 Pfam Myb-like DNA-binding domain 235 277 IPR001005 -
Vian8g00084 350 CDD SANT 187 229 IPR001005 -
Vian8g00084 350 Gene3D - 183 234 - -
Vian8g00084 350 Gene3D - 236 300 - -
Vian8g00084 350 SUPERFAMILY Homeodomain-like 183 276 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00084 Vian-Chr8 1187999 1190730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00084 144 331 MYB Transcription Factor Family AT4G18770 47.938 4.05e-50 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian8g00084 Myb_DNA-binding 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00084 K09422 - gmx:102666249 327.791