Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00081 ATGGGCCCCACTGCATTGGTACTTTCACCAACAAGGGAGTTGGCGACACAAATACAAGATGAGGCTGTGAAGTTTGGGAAATCTTCAAGAATTTCTTGTGCATGTTTGTATGGAGGAGCACCCAAGGGTCCTCAACTCAGAGACATTGACCGGGGAGCAGATATTGTGGTAGCCACTCCTGGTCGCTTGAATGATATTCTTGAGATGAGAAGAATTAGTCTTCATCAGGTCTCTTACCTGGTGCTAGATGAGGCAGACCGGATGCTGGATATGGGTTTCGAACCTCAAATTAGGAAAATTGTTAATGAGGTGCCTAATCGCAGGCAAACACTCATGTTTACTGCAACTTGGCCAAAGGAGGTTAGGAAAATTGCAGCTGATCTACTGGTCAAACCTGTCCAGGTGAACATTGGCAATGTGGACGAGCTTGTTGCTAACAAGTCAATTACTCAGCATGTTGAAGTGTTGCCCCTGATGGAGAAACAGAGACGTCTGGAACATATTTTACGGTCACAGGATCAAGGATCAAAGATAATCATATTCTGTTCTACCAAGAAAATGTGTGATCAACTTGCTCGAACTCTGACACGTCAGTTCGGAGCTGCTGCTATACATGGGGATAAATCCCAGGCTGAGAGGGATCACGTGTTGAGTCAGTTTCGAACTGGGAGGTCACCTGTTCTTGTGGCTACAGATGTTGCTGCCCGGGGACTGGATATCAAGGACATTAGGGTGGTTGTCAATTACGACTTCCCCACAGGAGTTGAAGACTATGTTCATAGGATTGGAAGGACTGGAAGGGCTGGAGCCACTGGGCTAGCTTACACTTTCTTTGGTGACCAGGATGCAAAATATGCTACCGATCTCATCAAAGTTTTGGAAGGTGCAAATCAGAAAGTACCTCCAGAACTTCGGGATATGTCATCGCGGGGTGGTAGTGGGATGGGAAGATCCAGACGATGGGGTTCTGGTGGAAGAGGTGGACGCAGTGATTCTGGATATGGTGGAAGGAATAATGATTCAGGATATGGTGGAAGGGGTGGTGATTCAAATTATGGAGCTAGGGGAAATGCTTCTTCTGGGAGAGGAGGCCGTGGTTTTGACTATGATTCTCAGAGGAATGATCGGGGTCTGAGTCCAGACAAGGGATCTAAATGGAGTGATCGCTACAAAAGCGTCAACCGTGAACGTAGTCGTAGCCCTGACAGGGCTGCATTACCTCAACATTCCCAAAGCAGCAGTTTTCACAAGGCAATGATGGAACGTGGTGGATGGGGTGATAGTGATCGCAATAAGAGCTCTAACAGAGATAGAAGCCGCAGTCCTAGCCCCTACAGACAGGAAAGGACCACAGCAGTTCGTGAACGATCCCCAGTTCACAGTTTTCATCGATCGATGATGGGACAAAGTCAATCATCCCCACCACGGCAGCGTGCACGCAGTCCTTATCGAAACTCATCACCCTCCCAGGGCGGTGGTAGGTCTTATAATAGTCCTCCAAAAGAGTGGGGAGGCAATGGAGGAGAGGTGGAGGAAGGGATGATTCCAGAGGAAGATGGAATGATAGGTCAAGGTGGGGATTAG 1584 0.4811 MGPTALVLSPTRELATQIQDEAVKFGKSSRISCACLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPNRRQTLMFTATWPKEVRKIAADLLVKPVQVNIGNVDELVANKSITQHVEVLPLMEKQRRLEHILRSQDQGSKIIIFCSTKKMCDQLARTLTRQFGAAAIHGDKSQAERDHVLSQFRTGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKYATDLIKVLEGANQKVPPELRDMSSRGGSGMGRSRRWGSGGRGGRSDSGYGGRNNDSGYGGRGGDSNYGARGNASSGRGGRGFDYDSQRNDRGLSPDKGSKWSDRYKSVNRERSRSPDRAALPQHSQSSSFHKAMMERGGWGDSDRNKSSNRDRSRSPSPYRQERTTAVRERSPVHSFHRSMMGQSQSSPPRQRARSPYRNSSPSQGGGRSYNSPPKEWGGNGGEVEEGMIPEEDGMIGQGGD 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00081 527 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 5 308 - -
Vian8g00081 527 SMART ultradead3 2 152 IPR014001 -
Vian8g00081 527 Gene3D - 141 311 IPR027417 -
Vian8g00081 527 CDD SF2_C_DEAD 149 278 - -
Vian8g00081 527 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 164 308 IPR001650 -
Vian8g00081 527 FunFam ATP-dependent RNA helicase RhlB 139 311 - -
Vian8g00081 527 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 286 IPR027417 -
Vian8g00081 527 MobiDBLite consensus disorder prediction 463 496 - -
Vian8g00081 527 Pfam DEAD/DEAH box helicase 2 124 IPR011545 GO:0003676|GO:0005524
Vian8g00081 527 Gene3D - 1 140 IPR027417 -
Vian8g00081 527 MobiDBLite consensus disorder prediction 422 461 - -
Vian8g00081 527 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 135 IPR014001 -
Vian8g00081 527 Pfam Helicase conserved C-terminal domain 161 269 IPR001650 -
Vian8g00081 527 MobiDBLite consensus disorder prediction 300 527 - -
Vian8g00081 527 MobiDBLite consensus disorder prediction 368 403 - -
Vian8g00081 527 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 81 89 IPR000629 -
Vian8g00081 527 SMART helicmild6 189 269 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00081 Vian-Chr8 1166368 1168870 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00081 5 307 Eukaryotic Initiation Factors Gene Family AT3G19760 33.882 5.56e-54 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00081 K12823 - gmx:100816455 788.489