Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00077 ATGGAAGAAGATTTGATCTTGATCAACTATATTGCAAATCATGGTGAAGGTGTTTGGAATTCTCTAGCCAAAGCTTCTGGTCTTAAACGAACTGGAAAAAGTTGTCGACTTCGTTGGCTAAACTACCTTCGTCCTGATGTTAGAAGAGGGAACATTACAACAGAAGAACAGCTTTTGATCTTTGAGCTTCATTCAAAGTGGGGTAATAGGTGGTCCAAAATTGCAAAGCATCTTCCAGGAAGAACTGACAATGAGATTAAGAACTTTTGGAGAACCAGAATCCAGAAGCACATGAAGCAAGCTGAGAATTCACAGCAACAGGGTAATAACAGTAACATTTCAGAGACAAATGATCATCATCATCATCACCATCAACATCATCATCATCATCAAGCAAGCTCTAGCACAAGCCTAGCATCCAACATGGCACTGCAAATTGAGTCTTACTCCACACCCTCATATCAAGAAACTTTGGAGCCATTTCCATCACAGTTTCCTCCAATCACTGATCAATCAAGTTCATGTACCAATCACAACATCAACGGCAACACCAACTATTGGAACATAGAGGATTTGTGGTCTATTCACTTGCTCAATGGGGATTGA 606 0.4026 MEEDLILINYIANHGEGVWNSLAKASGLKRTGKSCRLRWLNYLRPDVRRGNITTEEQLLIFELHSKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKHMKQAENSQQQGNNSNISETNDHHHHHHQHHHHHQASSSTSLASNMALQIESYSTPSYQETLEPFPSQFPPITDQSSSCTNHNINGNTNYWNIEDLWSIHLLNGD 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00077 201 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 155 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vian8g00077 201 CDD SANT 2 43 IPR001005 -
Vian8g00077 201 MobiDBLite consensus disorder prediction 99 114 - -
Vian8g00077 201 SUPERFAMILY Homeodomain-like 2 90 IPR009057 -
Vian8g00077 201 MobiDBLite consensus disorder prediction 153 176 - -
Vian8g00077 201 MobiDBLite consensus disorder prediction 97 138 - -
Vian8g00077 201 Gene3D - 52 136 - -
Vian8g00077 201 ProSiteProfiles Myb-like domain profile. 1 43 IPR001005 -
Vian8g00077 201 ProSiteProfiles Myb-like domain profile. 44 94 IPR001005 -
Vian8g00077 201 FunFam Myb-related protein 305 53 143 - -
Vian8g00077 201 CDD SANT 53 92 IPR001005 -
Vian8g00077 201 Gene3D - 1 48 - -
Vian8g00077 201 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 44 98 IPR017930 -
Vian8g00077 201 Pfam Myb-like DNA-binding domain 2 43 IPR001005 -
Vian8g00077 201 Pfam Myb-like DNA-binding domain 49 92 IPR001005 -
Vian8g00077 201 FunFam Myb transcription factor 1 48 - -
Vian8g00077 201 SMART sant 48 96 IPR001005 -
Vian8g00077 201 SMART sant 2 45 IPR001005 -
Vian8g00077 201 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 43 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00077 Vian-Chr8 1077595 1080722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00077 1 201 MYB Transcription Factor Family AT3G01530 57.711 1.38e-74 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian8g00077 Myb_DNA-binding 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00077 K09422 - gmx:100305972 285.419