Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00069 ATGGCAGCAGAACTTGTCGGTGGTGCTCTTCTTTCCGCTTTTCTTCAAGTTGCATTCGACAGGCTGGCTTCTCCTCAATTCGTTGACTTCTTTCGTGGAAGAAAACTTGATGATAAGCTGCTCCGAAATTTGAACATCATGCTCCACTCACTCAATGCTCTGGCCGATGATGCAGAACAGAAGCAGTTCAGAGATCCACACGTGAAATCATGGCTTTTTTCTGTCAAAGAGGCTGTCTTCGATGCAGAAGATCTCTTGGATGAAATTGATTATGAAATCACCAGATGCCAAGTGGAAGCTGAATCAGAACCTCAAACCATCATTTACAAGGTATCAAACTTCTTCAATGCTACTTTCAGATCATTTAACAGGAAAATTGACTCAGGGTTGAAAGAAGTCCTAGAAAAGTTAGAATACCTTACAAGGCAAAAGGGTGCTCTTGGTTTGAAAGAGGGTACTTATTCTGGTGATAGATCAGGTAGTGCAGTCTCACAAAAATTGCCATCAACTTCTTTGGTGGCTGAAAGTGTTATTTATGGCAGAGATACTGACAAAGAAATGATCATTAACTGGCTCACATCGGAAACTGACATCTGTAACCAACCATCAATACTTTCTATTGTGGGTATGGGTGGGTTGGGTAAGACCACACTCGTCCAACATGTATACAATGACCCCAAGGTGGACGATGCTAAATTTGATAGTAAAGCATGGGTCTGTGTTTCAGATCATTTTAATGCTTTAACAGTGGGAAAAACCATTCTTGAGGCAATCACTGATGAAAATGATGAAAGTGGAAACCTGGAAATGGTTCACAAAAAGCTAAAGGAAAAATTGAAAGGAAAGAAATTTCTTCTTGTTTTGGATGATATTTGGAACCAAAGACGAGACGAATGGGAAGCTGTACAAACTCCTCTTAGCTATGGGGCTCCAGGAAGTAAAATTCTTGTCACAACACGTGATGAGAAAGTTGCTTCTAACATGCAGTCTAAAGTACATCGCCTAAAGCAATTGCGAGAGGATGAATGCTGGAAAGTTTTTGAAAAACACGCATCAGAAGATTATAATCTTGAATTGAACGATGAACTAAAGGAGATTGGTAGCAGGATAGTTGATAAGTGCAAGGGGTTACCTTTAGCTTTGAAAACAATTGGATGCCTTTTACGCACAAAGTCATCAATTTCGGATTGGAAAAGCGTATTGGTAAGCGACATATGGGACTTACCTAATGAAGACAATGAAATTATCCCAGCACTATTTTTGAGCTATCACCACCTTCCTTCTCATCTTAAAAGGTGCTTTGCTTATTGTGCCTTGTTCCCCAAAGATTATGAGTTTGTGAAGGAGGAGTTAATTTTGTTGTGGATGGCCGAAAGTTTTCTACAGTGCCCTCAAACTAGACATCCAGAAGAAGTTGGTGAACAATACTTTAATGATCTATTGTCAAGGTCTTTCTTTCAACAATCAACCACGGAAAAGCGTTTCGTAATGCATGACCTTCTGAATGACTTGGCAAAATATGTTTGTGGGGACATCTGTTTCAGGTTGAAATTTGATAAAGGAAAATACATACCGAAATCAACCCGTCATTTTTCATTTGAATTTGATCACGTCAAATGTTTTGATGGTTTTGGGAGTTTAACTGATGCTAAAAGACTACGTTCTTTTCTTCCAATTACAGAAATTGAGAGAACTTACCTTGGTTATTATCCTTGGCAATTCAAGATTTCGGTACATGATTTGTTCTCCATGTTTAAGTTTTTACGCATCTTATCTTTCTATAATTGTTTGGGCCTTACAAAACTCCCAGATTCTATAGGTGATCTTAAGCATCTCCGTTCGTTAGACTTTTCACACACTGCGATACAAAAACTACCTGACTCAACATGTTTACTATATAACTTGCTAATACTGAAGTTGAACCATTGTTTAAGGCTGGAAAAGTTGCCCTCAAATTTGCATAAACTGACCAAATTGCGTTGCCTGGAATTCAAAAATACAAAGGTGACAAAGATGCCTATGCATTTTGGAGAATTGAAGAATCTTCAAGTACTGAATATGTTTTTCGTGGACAGAAATAATGAGTTTAGTACTAAGCAGCTAGGAAGACTCAGGCTTCATGGAAGGCTATCAATTAATGAGGTGCAGAATATTACGAATCCTTTGGATGCATTAGAAGCAAATTTGAAAAATCAACACCTTGTGGAGTTAGAGTTAAAATGGAACTCAAAGCACATCCTTAATGATCCAAAGAAAGAAAAGAAAATACTTGAGAATCTACAGCCTCCCAAACAATTGGAGGGTTTGGGTATAAGCAACTATGGTAGTACACACTTCCCAAGTTGGTTATTCAATAATTCATTAACAAATTTGGTATTCTTACGGTTGGAGGATTGTAAATATTGCATATTTTTGCCTCCCCTTGGACTATTGTCATCTTTGAAGACCCTCGAAATCGTAGGGCTTGATGGAATAGTGAGCATTGGTGATGAATTTTATGGGAGCAATGCTTCTTCATTCATGTCCTTAGAAAGATTGGAATTGTACGACATGAAGGAATTGAGAGAATGGAAATGTAAAACTACTTCTTTTCCACGTCTTCAACATCTGTCTATGGATCACTGTCCCGAGCTGAAAGGTCTGTCAGAGCACCTTCTTCATTTAAAGAAACTAGTTATCGGTTACTGTGATAAGCTCATCGTTAGCAGAAACAACATGGACACGTCATCGCTTGAACTCTTGAAGATTTGTTCGTGCCCTCTTACGAATATTCCCATGACCCATTATGACTTCCTTGAAGAAATGGATATAGATGGCGGTTGTGACTTTCTTACAACCTTTTCGCTAGATTTCTTTCCAAATCTCCGTTCACTTCAACTAACCAGATGCCGAAACCTGCAAAGATTTTCACACGAGCATACTCATAATCATCTCAAGTACTTCATAATTGAGAAGTGCCCTCTAGTTGAATCATTTTTCAGTGAAGGGTTATCTGCACCGTTGTTACAAAGAATTGAAATTCGGAGAGCGGAGAATTTAAAGTTGTTGCCAAAACGAATGGAAATCCTGCTTCCATCCCTTAATGAATTGTTGATAATTGATTGTCCAAAAGTGGAGACGTTCCCAGAAGGAGGTTTGCCATCAAATGTAAAACATGTGTCTCTTTCAAGTTTAAAACTTATAGCCTCCTTGAGAGAGTCATTGGATGCAAACACATGTCTTGAAAGCTTGTCTATTGGAAAGTTGGATGTTGAGTCGTTTCCTGATGAAGTTTTGCTACCTCACTCTCTCACTTCTCTACAAATATTTGATTGCCCAAATCTTAAAAAGATGGAGTACAAGGGTCTCTGTGACCTCTCTTCTCTCACACTTCTTCACTGCCCTGGCCTTCAATGCTTACCAGACGAGGGTCTGCCCAAAGCCATCTCTTCTCTTACAATTTGGGACTGTCCATTGCTCAAACAACGTTGTCAGAATCCGGAAGGTGAAGACTGGGGAAAGATTGGTCACATTGAAAAATTGATTATTAGGACATTATGA 3540 0.3881 MAAELVGGALLSAFLQVAFDRLASPQFVDFFRGRKLDDKLLRNLNIMLHSLNALADDAEQKQFRDPHVKSWLFSVKEAVFDAEDLLDEIDYEITRCQVEAESEPQTIIYKVSNFFNATFRSFNRKIDSGLKEVLEKLEYLTRQKGALGLKEGTYSGDRSGSAVSQKLPSTSLVAESVIYGRDTDKEMIINWLTSETDICNQPSILSIVGMGGLGKTTLVQHVYNDPKVDDAKFDSKAWVCVSDHFNALTVGKTILEAITDENDESGNLEMVHKKLKEKLKGKKFLLVLDDIWNQRRDEWEAVQTPLSYGAPGSKILVTTRDEKVASNMQSKVHRLKQLREDECWKVFEKHASEDYNLELNDELKEIGSRIVDKCKGLPLALKTIGCLLRTKSSISDWKSVLVSDIWDLPNEDNEIIPALFLSYHHLPSHLKRCFAYCALFPKDYEFVKEELILLWMAESFLQCPQTRHPEEVGEQYFNDLLSRSFFQQSTTEKRFVMHDLLNDLAKYVCGDICFRLKFDKGKYIPKSTRHFSFEFDHVKCFDGFGSLTDAKRLRSFLPITEIERTYLGYYPWQFKISVHDLFSMFKFLRILSFYNCLGLTKLPDSIGDLKHLRSLDFSHTAIQKLPDSTCLLYNLLILKLNHCLRLEKLPSNLHKLTKLRCLEFKNTKVTKMPMHFGELKNLQVLNMFFVDRNNEFSTKQLGRLRLHGRLSINEVQNITNPLDALEANLKNQHLVELELKWNSKHILNDPKKEKKILENLQPPKQLEGLGISNYGSTHFPSWLFNNSLTNLVFLRLEDCKYCIFLPPLGLLSSLKTLEIVGLDGIVSIGDEFYGSNASSFMSLERLELYDMKELREWKCKTTSFPRLQHLSMDHCPELKGLSEHLLHLKKLVIGYCDKLIVSRNNMDTSSLELLKICSCPLTNIPMTHYDFLEEMDIDGGCDFLTTFSLDFFPNLRSLQLTRCRNLQRFSHEHTHNHLKYFIIEKCPLVESFFSEGLSAPLLQRIEIRRAENLKLLPKRMEILLPSLNELLIIDCPKVETFPEGGLPSNVKHVSLSSLKLIASLRESLDANTCLESLSIGKLDVESFPDEVLLPHSLTSLQIFDCPNLKKMEYKGLCDLSSLTLLHCPGLQCLPDEGLPKAISSLTIWDCPLLKQRCQNPEGEDWGKIGHIEKLIIRTL 1179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00069 1179 Gene3D Ribonuclease Inhibitor 709 893 IPR032675 -
Vian8g00069 1179 Gene3D - 422 507 IPR036388 -
Vian8g00069 1179 Coils Coil 41 61 - -
Vian8g00069 1179 SUPERFAMILY L domain-like 909 1168 - -
Vian8g00069 1179 Pfam NB-ARC domain 182 423 IPR002182 GO:0043531
Vian8g00069 1179 FunFam Probable disease resistance protein At1g61300 162 333 - -
Vian8g00069 1179 Gene3D - 338 421 IPR042197 -
Vian8g00069 1179 SUPERFAMILY L domain-like 496 893 - -
Vian8g00069 1179 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 437 IPR027417 -
Vian8g00069 1179 Gene3D Ribonuclease Inhibitor 525 700 IPR032675 -
Vian8g00069 1179 ProSiteProfiles Leucine-rich repeat profile. 611 632 IPR001611 GO:0005515
Vian8g00069 1179 PANTHER DISEASE RESISTANCE PROTEIN RP 55 862 IPR044974 GO:0006952
Vian8g00069 1179 Gene3D - 160 337 IPR027417 -
Vian8g00069 1179 Gene3D Ribonuclease Inhibitor 899 1162 IPR032675 -
Vian8g00069 1179 Pfam Rx N-terminal domain 11 103 IPR041118 -
Vian8g00069 1179 Gene3D - 33 128 - -
Vian8g00069 1179 PRINTS Disease resistance protein signature 204 219 - -
Vian8g00069 1179 PRINTS Disease resistance protein signature 950 966 - -
Vian8g00069 1179 PRINTS Disease resistance protein signature 374 388 - -
Vian8g00069 1179 PRINTS Disease resistance protein signature 278 292 - -
Vian8g00069 1179 FunFam Probable disease resistance protein At1g63360 423 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00069 Vian-Chr8 963700 968308 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00069 205 687 WRKY Transcription Factor Family AT5G45050 22.936 6.71e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00069 - - vra:106774688 1615.9