Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00064 ATGTATGGGTGCCTGGGATTTTCCAATTCAAGATTTTATGCTAAGCCGTTGGCTGAGCTTATTACTTTACAAGGAAGGGAGATACTGCAGAGTACTGTTGATTTAGTTCAGAATGCCTTGAATTTAGAGGTGATCTATGGCGACACCGATTCAATAATGATTTACAGTGGGCTGGATGATATTGAGGAAGCTAATAAAATTGCTGCAAAAGTTATTCAAGAGGTCAATAAGAAATATAAATGTTTGGAAATTGATCTTGATGGTTTATATAAAAGAATGCTGCTTCTCAAGAAAAAGAAGTATGCAGCATTGAAGTTGCTGTTTAAAGATGGCACCCCATATGAGGTGATTGAACGTAAAGGTCTTGACATTGTTCGTCGTGACTGGAGCTTATTAGCTAAAGAATTAGGAGATTATTGCTTGACTCAAATTTTGTCTGGAGGATCATGTGAAGATGTAGTGGAGTCAATCCACAACTCGCTCATGAAGGTACAAGAAGAAATGAGGAACGGACAAGTACCATTAGAGAAATATGTCACTACGAAGACATTGACTAAACCCCCTGAAGCTTATCCTGATGCCAAGAACCAGCCACATGTTCTTGTGACACAAAGACTGAAGCAACAAGGTTACTCTTCTGGCTGTTCTGTTGGTGATACAATCCCGTATATAATTTGTTATGAACAGGGTGGCAGTTCAGGCAGTGCTGGTGGCATTGCTCAACGTGCTAGACATCCTGAAGAACTTAAAGGGGAACAAGGGACATGGCTGATTGACATTGATTACTATTTATCACAACAGATCCATCCCGTAGTATCACGCCTTTGTGCATCAATTCAGGGAACAAGCCCAGAAAGACTGGCTGATTGCTCAGGGCTTGACTCCTCAAAGTTTCATCATAAATCATGTGAAGCTTTTAATGATGATTCTAGCAGTTTACTCTTGTCTGCTGCTAACGACGAGGAGAGGTATCGAGGATGTGAGCCATTGGTCTTGTCATGCCCCAGCTGCTCTGGTACATTTGACTGCCCACCCGTCTCTAAATATATTTGCTGCTTGTTGGAAAGTGGAATGACAACCAGCGTATCCACCGAGGAATCTGACTTCAATTTCTGGCGTAAGCTGTGTTGTCCTAAATGCTCCGAAGATATCAAAATTTCTCCAGCGATGATAGCGAATCAGGTCAAAAGGCAAGCAGAGATGTTTGTTTTGATGTACTATAAAGGTTTACTAACGTGTGATGATGAAACGTGTAAGCATACAACGCGAAGTATCAGCCTTTGGTTGGTTGGTGATTCCGAGAGAGGAACTGTTTGTCCAAATTATCCTCGTTGCAATGGTCGTCTGCTTAGAAAGTACACTGAAGCAGACTTGTACAAGCAGCTCTCGTATTTTTGCCACGTGTTTGACACTGTTTCTTGTATAGAAAAGGTACTCACTAACGCTGTGTTCGTTTGA 1458 0.415 MYGCLGFSNSRFYAKPLAELITLQGREILQSTVDLVQNALNLEVIYGDTDSIMIYSGLDDIEEANKIAAKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAALKLLFKDGTPYEVIERKGLDIVRRDWSLLAKELGDYCLTQILSGGSCEDVVESIHNSLMKVQEEMRNGQVPLEKYVTTKTLTKPPEAYPDAKNQPHVLVTQRLKQQGYSSGCSVGDTIPYIICYEQGGSSGSAGGIAQRARHPEELKGEQGTWLIDIDYYLSQQIHPVVSRLCASIQGTSPERLADCSGLDSSKFHHKSCEAFNDDSSSLLLSAANDEERYRGCEPLVLSCPSCSGTFDCPPVSKYICCLLESGMTTSVSTEESDFNFWRKLCCPKCSEDIKISPAMIANQVKRQAEMFVLMYYKGLLTCDDETCKHTTRSISLWLVGDSERGTVCPNYPRCNGRLLRKYTEADLYKQLSYFCHVFDTVSCIEKVLTNAVFV 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00064 485 ProSitePatterns DNA polymerase family B signature. 46 54 IPR017964 GO:0000166|GO:0003676
Vian8g00064 485 Gene3D DNA Polymerase alpha, zinc finger 317 483 IPR038256 -
Vian8g00064 485 Gene3D - 124 308 IPR042087 -
Vian8g00064 485 Coils Coil 58 92 - -
Vian8g00064 485 FunFam DNA polymerase 122 308 - -
Vian8g00064 485 FunFam DNA polymerase 317 484 - -
Vian8g00064 485 Pfam DNA Polymerase alpha zinc finger 317 480 IPR015088 GO:0003887|GO:0006260
Vian8g00064 485 Pfam DNA polymerase family B 1 278 IPR006134 GO:0000166|GO:0003677
Vian8g00064 485 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 1 478 - -
Vian8g00064 485 Gene3D Palm domain of DNA polymerase 1 123 IPR023211 -
Vian8g00064 485 SUPERFAMILY DNA/RNA polymerases 1 294 IPR043502 -
Vian8g00064 485 NCBIfam DNA polymerase (pol2) 1 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00064 Vian-Chr8 881820 885699 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00064 1 478 Core DNA Replication Machinery Family AT5G67100 70.539 0.0 707
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00064 K02320 - var:108345720 937.562