Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00062 ATGGGAGGTCTCGAAGATATCAAGAACGAGGCAGTGGATCTGGAGCGGATTCCTGTGGATGAAGTGTTCCGCGAACTGAATTGTACGAAGGAAGGTCTGACGAATGAGGAAGGCGACAAGAGGTTGCAGGTTTTTGGACCAAACAAAGATGGAAGGTGGTCTGAAGTGGACGCTAGCATACTGGTACCGGGAGATATAATCAGCATCAAACTGGGAGACATCATTCCAGCTGATGCTCGTCTCTTGGAAGGAGATTCCCTCAAGATTGATCAGTCTGCACTCACGGGCGAGTCATTACCTGTTACTAGGAACCCCGGCGATGAAGTCTTCTCTGGCTCCACAGTGAAGCAAGGAGAGATTGAAGCAGTTGTAATCGCTACTGGGGTTCATACCTTCTTCGGTAAGGCTGCTCACCTGGTCGACAGCACTAACCAAGTTGGGCATTTCCAAAAGGTGTTGACGGCCATTGGAAATTTCTGCATTTGCTCAATTGCTTTGGGGATGATCATTGAAATTGTGGTGATGTATCCAATTCAGCACCGCAAGTACAGGAGCGGAATCAACAACCTCTTGGTCCTTCTGATTGGAGGGATTCCCATTGCCATGCCTACAGTGTTGTCAGTAACAATGGCAATTGGTTCCCACAGGCTCTCTGAGCAAGGTGCTATCACCAAGAGGATGACAGCCATTGAGGAGATGGCTGGGATGGATGTTCTGTGCAGTGACAAGACTGGCACTCTTACACTTAACAAGCTTACAGTGGACAAGTCTTTGATTGAGATTTTCTCAAGAGATGCTGACAAGGATACAGTAATTTTGCTTGGGGCTAGGGCCTCCAGAGTTGAAAACCAGGATGCTATTGATGCTTGCATAGTTGGAATGTTGGGCGATCCAAAAGAGGCTAGAGATGGCATTACAGAGGTGCATTTTCTGCCATTTAACCCAGTGGACAAACGCACAGCCATAACATACATAGACAGTGAAGGTAAGTGGTACCGAGTAAGCAAAGGTGCACCAGAACAGATTATCGAGCTCTGCAACCTTCGGGAAGAAGTGAAGAAGAAGGCTTTATCCATCATTGATAAATTTGCTGACCGCGGTCTTCGTTCGCTTGCTGTGGCGAAACAAGAGGTGCCAGAAAAGACAAAGGAGAGTGCTGGAGGACCATGGCAGTTCGTGGGTCTGTTGCCACTCTTTGACCCACCAAGGCATGACAGTGCTGAGACTATAAGGCGCGCTCTCCATCTAGGAGTTAACGTTAAGATGATTACAGGTGATCAGCTAGCCATCGGCAAGGAAACTGGTCGCAGACTTGGCATGGGAAGCAACATGTATCCTTCTTCATCCCTCCTCGGTCAGCATAAGGATGAGTCCATTGCTGCACTTCCCATTGATGAACTTATTGAGAAAGCTGATGGCTTTGCCGGTGTCTTCCCTGAGCACAAGTACGAGATAGTAAAGAGACTCCAGGAAAGGAAACACATTTGTGGGATGACAGGAGATGGTGTGAACGATGCACCTGCACTCAAAAGAGCTGATATTGGGATCGCTGTTGCCGATGCAACTGACGCAGCTCGAAGTGCATCCGACATAGTTCTCACCGAGCCTGGCTTGAGTGTGATCGTGAGTGCTGTGTTGACAAGCAGAGCCATCTTCCAAAGGATGAAGAATTACACCATATATGCTGTTTCTATTACCATCCGAGTGGTGTTAGGGTTTATGCTGCTTGCTCTGATCTGGAAGTTTGACTTCTCACCCTTCATGGTTTTGATCATTGCCATTCTGAATGATGGTACCATCATGACCATTTCCAAAGACAGGGTGAAGCCATCTCCAGTGCCAGATTCCTGGAAGTTGAGAGAGATTTTCTTTACCGGCGTTGTTCTCGGTGCCTACCTAGCTATCATGACTGTTGTCTTCTTCTGGGCTGCTTATGCATCTAACTTTTTCTCGGACAAATTCGGAGTGAGATCCATCAGGGAAAGCCACGGCGAGCTCACGGCAGCTGTTTATCTTCAAGTGAGCATTGTAAGTCAAGCACTCATTTTTGTGACACGCTCCAGGAGCTGGTCTTACGTTGAACGCCCTGGTCTGCTTCTTGTCGTTGCTTTTCTTATAGCACAGCTCATAGCCACAATCATAGCTGTGTATGCAAACTGGGAATTTGCAAAGATTAAAGGCATTGGATGGGGTTGGGCTGGTGTGATTTGGGTATACAGCATAATTTTCTATATTCCCATGGATATTCTGAAGTTCATCATCCGATATGCATTAACTGGAAAAGCTTGGAACAATATCACTGAGAATAGGGTTGCTTTCAACTCAAAGAACGATTATGGAAAGGGAGAAAGAGAAGCACAGTGGGCTGCAGCTCAACGCACATTACATGGCTTGAATCCACCTCAAACTGTTCATGACATTTTGAATGAGAGAAACGATTACAGGGAGCTGTCTGAACTTGCAGAACAGGCCAAGAAACGTGCCGAAGTTGCCAGGCTAAGGGAGGTTCACACTCTGAAGGGTCATGTTGAGTCTGTCGTGAAGCTCAAAGGACTTGACATTGATACAATCCAGCAGAACTACACACTTTGA 2592 0.4699 MGGLEDIKNEAVDLERIPVDEVFRELNCTKEGLTNEEGDKRLQVFGPNKDGRWSEVDASILVPGDIISIKLGDIIPADARLLEGDSLKIDQSALTGESLPVTRNPGDEVFSGSTVKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIALGMIIEIVVMYPIQHRKYRSGINNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSEQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKSLIEIFSRDADKDTVILLGARASRVENQDAIDACIVGMLGDPKEARDGITEVHFLPFNPVDKRTAITYIDSEGKWYRVSKGAPEQIIELCNLREEVKKKALSIIDKFADRGLRSLAVAKQEVPEKTKESAGGPWQFVGLLPLFDPPRHDSAETIRRALHLGVNVKMITGDQLAIGKETGRRLGMGSNMYPSSSLLGQHKDESIAALPIDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPALKRADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRVVLGFMLLALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPVPDSWKLREIFFTGVVLGAYLAIMTVVFFWAAYASNFFSDKFGVRSIRESHGELTAAVYLQVSIVSQALIFVTRSRSWSYVERPGLLLVVAFLIAQLIATIIAVYANWEFAKIKGIGWGWAGVIWVYSIIFYIPMDILKFIIRYALTGKAWNNITENRVAFNSKNDYGKGEREAQWAAAQRTLHGLNPPQTVHDILNERNDYRELSELAEQAKKRAEVARLREVHTLKGHVESVVKLKGLDIDTIQQNYTL 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00062 863 PRINTS H+-transporting ATPase (proton pump) signature 499 515 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian8g00062 863 PRINTS H+-transporting ATPase (proton pump) signature 530 555 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian8g00062 863 PRINTS H+-transporting ATPase (proton pump) signature 471 487 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian8g00062 863 PRINTS H+-transporting ATPase (proton pump) signature 356 374 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian8g00062 863 PRINTS H+-transporting ATPase (proton pump) signature 671 692 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian8g00062 863 Pfam Cation transporter/ATPase, N-terminus 17 49 IPR004014 -
Vian8g00062 863 PRINTS P-type cation-transporting ATPase superfamily signature 499 518 - -
Vian8g00062 863 PRINTS P-type cation-transporting ATPase superfamily signature 416 426 - -
Vian8g00062 863 PRINTS P-type cation-transporting ATPase superfamily signature 90 104 - -
Vian8g00062 863 PRINTS P-type cation-transporting ATPase superfamily signature 522 534 - -
Vian8g00062 863 PRINTS P-type cation-transporting ATPase superfamily signature 240 254 - -
Vian8g00062 863 PRINTS P-type cation-transporting ATPase superfamily signature 394 405 - -
Vian8g00062 863 CDD P-type_ATPase_H 49 752 IPR006534 GO:0008553|GO:0016020|GO:0120029
Vian8g00062 863 FunFam ATPase 4 plasma membrane-type 484 726 - -
Vian8g00062 863 SUPERFAMILY Calcium ATPase, transmembrane domain M 13 757 IPR023298 -
Vian8g00062 863 FunFam Plasma membrane ATPase 252 399 - -
Vian8g00062 863 Pfam haloacid dehalogenase-like hydrolase 236 513 - -
Vian8g00062 863 Gene3D - 49 127 - -
Vian8g00062 863 FunFam Plasma membrane ATPase 46 127 - -
Vian8g00062 863 PANTHER CALCIUM-TRANSPORTING ATPASE 49 794 - -
Vian8g00062 863 Gene3D - 812 863 - -
Vian8g00062 863 Gene3D - 252 399 IPR023299 GO:0000166
Vian8g00062 863 NCBIfam plasma-membrane proton-efflux P-type ATPase 49 717 IPR006534 GO:0008553|GO:0016020|GO:0120029
Vian8g00062 863 FunFam Plasma membrane ATPase 392 547 - -
Vian8g00062 863 SFLD p-type atpase 222 551 IPR044492 -
Vian8g00062 863 SFLD Haloacid Dehalogenase 222 551 - -
Vian8g00062 863 Gene3D - 237 536 IPR023214 -
Vian8g00062 863 Coils Coil 807 834 - -
Vian8g00062 863 SUPERFAMILY Calcium ATPase, transduction domain A 49 140 IPR008250 -
Vian8g00062 863 Pfam E1-E2 ATPase 43 219 - -
Vian8g00062 863 NCBIfam HAD-IC family P-type ATPase 52 271 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian8g00062 863 NCBIfam HAD-IC family P-type ATPase 474 584 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian8g00062 863 ProSitePatterns E1-E2 ATPases phosphorylation site. 242 248 IPR018303 -
Vian8g00062 863 SUPERFAMILY HAD-like 236 546 IPR036412 -
Vian8g00062 863 Gene3D - 128 726 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00062 Vian-Chr8 871184 874036 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00062 49 863 Primary Pumps ATPases AT3G42640 82.822 0.0 1408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00062 K01535 - gmx:100782329 1466.44