Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00048 ATGTCTGGTGGTGAAGAGGTAGCTGTTGCAGCTGAGGCACCTGCTTCCATTCCTGGTGAGCCCATGGACATCATGACTGCTTTACAGCTTGTGCTGAGAAAATCTCTGGCTTACGGTGGTCTTGCAAGAGGTCTTCATGAAAGTGCCAAGATCATTGAGAAGCATGCTGCACAGCTGTGTGTTCTAGCAGAAGACTGTGACCAACCCGATTATGTGAAACTGGTGAAGGCCCTTTGCGCCGAGCACAATGTTAGCCTTTTGACAGTTACAAGTGCAAAGACCCTTGGAGAATGGGCTGGTTTGTGTAAGATTGATTCAGAGGGAAAGGCTAGGAAGGTAACTGGTTGTTCATGTGTGGTTGTTAAGGATTTTGGGGAGGAACATGAAGCCTATAATGTTGTTCTGCAGCACGTGAAAGCTAACTAA 426 0.4718 MSGGEEVAVAAEAPASIPGEPMDIMTALQLVLRKSLAYGGLARGLHESAKIIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVTSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKAN 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00048 141 FunFam 40S ribosomal protein S12 8 141 - -
Vian8g00048 141 PANTHER 40S RIBOSOMAL PROTEIN S12 17 140 - -
Vian8g00048 141 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 27 120 IPR004038 -
Vian8g00048 141 ProSitePatterns Ribosomal protein S12e signature. 27 45 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vian8g00048 141 SUPERFAMILY L30e-like 21 139 IPR029064 -
Vian8g00048 141 PRINTS Ribosomal protein S12E family signature 31 44 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vian8g00048 141 PRINTS Ribosomal protein S12E family signature 86 107 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vian8g00048 141 PRINTS Ribosomal protein S12E family signature 45 61 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vian8g00048 141 PRINTS Ribosomal protein S12E family signature 111 124 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vian8g00048 141 Gene3D - 6 141 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00048 Vian-Chr8 682396 683796 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00048 17 141 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 74.400 5.31e-66 195