Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00039 ATGAAGAAGAGTGAGAGTGGAGGGTATGTGAGAGCGGATCAGATAGATCTGAAGAGCTTGGATGAGCAGCTTCAGAGGCATCTTAGTAGAGCATGGACTATGGAGAAGAACAAGGAGAAGGAGGAAGAGGAGGTTGAAGGAAGGTCCACAAGAAGCAGACAAGAGTGGGAGATTGACCCCTCTAAGCTTGTCATCAAGGCTGTCATTGCCCGTGGCACTTTTGGCACAGTTCATCGTGGGATTTATGACGGACAAGATGTTGCAGTTAAGCTCCTTGACTGGGGAGAAGAGGGACATCGATCAGATGCTGAAATAGCTTCTTTGAGAGCGGCGTTTACTCAAGAAGTTGCTGTTTGGCACAAGCTTGACCATCCTAATGTAACCAAGTTTATTGGGGCAACAATGGGAACATCAGAGCTACAGTTACAAACAGAAAACGGTCATATAGGCATGCCAAGTAATGTTTGTTGTGTTGTTGTTGAATATTGTCCTGGAGGTGCTCTGAAGACTTATCTTATTAAAAACCGAAGAAGGAAGCTGGCTTTTAAAGTGGTTGTTCAACTGGCTCTTGACCTTGCAAGAGGGTCCAATCTTTTTGCCTTATCTGTGTCATATAAGCTCAAGGGAATAAGCTTTTTTTTCCTAAGCCTGAGAACTCTTTATTATTTACTTTACAGGTTGAGCTATCTCCACACAAAGAAGATTGTCCACAGAGATGTTAAAACAGAAAATATGCTTCTGGACAAGACACGAACCTTGAAAATAGCTGATTTTGGAGTGGCTCGGATTGAGGCCTCCAATCCTCATGACATGACAGGTGAAACTGGAACCCTTGGTTACATGGCTCCTGAGGTTCTAAATGGTAATCCATACAATAGAAAGTGTGACGTGTACAGTTTTGGCATATGCTTATGGGAGATATACTGCTGTGACATGCCATATCCGGACCTTAGCTTCTCCGAAGTGACATCAGCTGTAGTACGGCAGAATCTGAGGCCGGAGATTCCAAGATGTTGCCCTAGCTCTCTGGCAAATGTGATGAAAAGATGCTGGGATGCTAATCCTGACAAGAGGCCAGAAATGGATGAAGTGGTGTCCATGTTGGAAGCTATTGACACTTCAAAGGGTGGAGGTATGATCCCTCTTGATCAGCCTCAGGGTTGTTTATGTTTTCGCAGCTATCGAGGACCTTGA 1194 0.4447 MKKSESGGYVRADQIDLKSLDEQLQRHLSRAWTMEKNKEKEEEEVEGRSTRSRQEWEIDPSKLVIKAVIARGTFGTVHRGIYDGQDVAVKLLDWGEEGHRSDAEIASLRAAFTQEVAVWHKLDHPNVTKFIGATMGTSELQLQTENGHIGMPSNVCCVVVEYCPGGALKTYLIKNRRRKLAFKVVVQLALDLARGSNLFALSVSYKLKGISFFFLSLRTLYYLLYRLSYLHTKKIVHRDVKTENMLLDKTRTLKIADFGVARIEASNPHDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEVTSAVVRQNLRPEIPRCCPSSLANVMKRCWDANPDKRPEMDEVVSMLEAIDTSKGGGMIPLDQPQGCLCFRSYRGP 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00039 397 SMART serkin_6 63 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian8g00039 397 ProSiteProfiles Protein kinase domain profile. 63 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian8g00039 397 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672|GO:0006468
Vian8g00039 397 Gene3D Transferase(Phosphotransferase) domain 1 163 377 - -
Vian8g00039 397 Pfam Protein kinase domain 66 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian8g00039 397 CDD STKc_MAP3K-like 69 368 - -
Vian8g00039 397 PRINTS Tyrosine kinase catalytic domain signature 160 173 IPR001245 GO:0004672|GO:0006468
Vian8g00039 397 PRINTS Tyrosine kinase catalytic domain signature 229 247 IPR001245 GO:0004672|GO:0006468
Vian8g00039 397 PRINTS Tyrosine kinase catalytic domain signature 339 361 IPR001245 GO:0004672|GO:0006468
Vian8g00039 397 PRINTS Tyrosine kinase catalytic domain signature 295 317 IPR001245 GO:0004672|GO:0006468
Vian8g00039 397 PIRSF ILK 12 377 - -
Vian8g00039 397 MobiDBLite consensus disorder prediction 31 53 - -
Vian8g00039 397 Coils Coil 24 44 - -
Vian8g00039 397 SUPERFAMILY Protein kinase-like (PK-like) 45 368 IPR011009 -
Vian8g00039 397 FunFam Kinase suppressor of Ras 1 52 147 - -
Vian8g00039 397 Gene3D Phosphorylase Kinase; domain 1 51 146 - -
Vian8g00039 397 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 54 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00039 Vian-Chr8 534939 538658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00039 11 397 MAP Kinase Kinase Kinase AT3G22750 64.194 0.0 527
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vian8g00039 Pkinase 5.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00039 - - gmx:100796762 708.753