Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00033 ATGGAGCTCCCCGATTCCACCGGCGGCGACCGCAACCTTAACGCGCCGCCGCCGCAGCCACAGCACAATAACCACCACCAGGACGCTCGCTCAGGCCTCGGAATCGACCTTAACGAGATCCCTTCGCCTTCCTCCTTGTTCGCCGAAACCCTACCGGACTCCGTCACCGACGTCGTCCGCACTTATCACGAGAACCCCGGGCCGCCGCCGGGAGCCCCCGCTGCCCTCCCTAGCGCTTACTGTGCGTGCACTACGGTGTGTCCATTTGGTGCCCCTGTGACATATTCAAACTTTTACAATGGAAATGCTACTGGCTTCCAAAAGGCTTCTGGAGGTTTGACACAGGCTGATAGAGTGGGTTTTGAGGATATATTGAATCATACTCAATCGATTACTAGAAAATTTGAGGAGGTATGTACAGATTTCCCTCTTAGAATTCATAGTAGTAATAACAATACGGCTATTATAATACCATCTCGGAGTCCAAATGAGATATTTTTGCAGGCTCTTAAAGATTTTATATCTGAACGGCGTGGTGTACTAGAGGAAGGTTGGCGAGTGGAATTTAGACAATCAGTTAGCAGCTCTGAACTATATGCAGTTTACTGTGCACCCGATGGAAAGATATTTGATTCTGTGTATGAAGTAGCTTGTTATTTGGGGCTAATGTCTGGCTTCAATGCCGTTGAATCTGAAATAAGACATGAGAGGTCTCTTGTGTCTTTAAGTGGTTCTCTATCTAGGAAAAAAAAGTCAACAAGATCTCCCGTAGTGAATGGTTTCGTGGAAAAACGGGGAACCATGATGAATAGTAATTGTAAGGATCCTTCTTCTGAAGGTTTAAATGTGGAATGTGCTAGTACTAGGGGGAATATCGCAAAACCCTATGAAAGTGGAAGAAAAGAGGATGGACAGTCCTTCCCTCAGCAATTTGAGAATGAACTCCCTCTACAGTTCAAGGACTTCTTTGTTCTCTCATTGGGGAAAGTTGATGTGAGACCATCGTATTACGATGTTAATCTTATCTGTCCTGTAGGTTATAAATCTTGTTGGCATGACAAGATTACTGGTTCTCTTTTTACATGTGAAGTTTTGGAGGGTGGTGATTCTGGACCTATATTTAGGATCCGAAGGTGTTCCTGTTCCGAATTTCCTGTTCCAGTTGGGTCAACCATCCTTTCATTGTCAAAATGTTGTCAACTTGCAAGTCAAGCTGATGAAGGCAATGGAAAAACTAATGGTAGTATGGATTTGGATGATGGTGATAATATCCAGATGATGCTTCAAGACCCTTGTGTACCAACTGAAAATGATGTCCTAAGTTGCTCTGCAAACTTCTCAATTAAGGATACTCATACACCAGATGCATTAGGCCCTGCGACTGGTTCAGTTCAAGATAATGCTATACATTCTTTACCTGATGAGTTTAATGATGGAATTGGTGAATTTTGTGTGGAAGAGCGGTCATCGTGCTCTGCATGGAGAGTTATTTCTCAGAAGTTAGTTGATGCTTGCAAGGATTTGTGCAAACAGAAAGGAACACTCAAGTTCTATTGTAACCATGTTAAGAATGAAACATGCTTACATCAATGGGATTTAGGGAATGTAAAAAGTGATGAATTGGATAAATTTTGTGGTTCCCTCGGTTCAGTTGGCATCCCAGATGTAATTTATGCAGACAGTGATCTGGAAGGTATCTCTGAGGCTTTGAGAAAATGGTTGGAGCAGGATAGGTTTGGATTGGATGTTGAATTTGTTCAAGAAGTATTGGAACAGCTTCCTGGTGTTGAATCTTTGCAGTATGAACTTTTAAATTGTAGAGATAACAGCTCGTCATTGCCAACAGTAGAAAATGGTTTCTTAGTGGTTGAATGGAGAGAGGGGTCAAAACATCAGGAAGAAGCACTTCAAGGTTTATACAGGAGGTCTAAAAAGGCAAGTTTGACTAAAAAAAGCTTTAAGGAAGGTCGTCGTCCACCACTTGGGAAGCCATTATGCTCCAGGGCTCCGGGTGAGCTCATTGGTGACATTTTTCAGGCTTGGGAACTTTTAGAGCGATTTAATGAAGTTCTGGACTTGCAAGAACCATTGTCATTAGATGAGCTTGAGAAGGAACTGATTAGCCCTTGGTTTGATGGATTGGATTTTCTTGAGAAATCGGAGAGGGACATGGATTTAATTTCCGAAGGAACTGATGGTAATTGCAGACCATTATTGTCCCTAGGAGGTGATACTGGTCCATCAGGTTCCATGGAAGGTTCTCATGCATTTATTCAAATGGAAACTGAAGCAATGAAGGAGGCTGCTCAAGTTAAGCTCGCATCTTTCACTTACGCCAGATGCTTTGGTGTAACTTTGACCAAGGCTCATAATTCACTGCTGAGGGTGCTAATAGGTGAATTGCTATCAAGGGTGGCTGTCCTGGTGGATCCAAATTCTGAACCTGGAGAAACACGAACAAGACGGGGAAGAAAGAAAGATATGGATAGTGGTCTTCCTGCTAAACGAACCAAACTGAACATGCTTCCTATTAATGAGTTGACTTGGCCAGAATTAGCTCGGAGATATATCTTGGCTTTTTTAACAATGGATGGCAACCTTGAATCTGCAGAAATTACTGCCCGCGAAAGTGGTAAAGTATTTCGCTGCTTACGAGGTGATGGTGGTTTGCTGTGTGGTGCTCTTACTGGTGTGGCGGGAATGGAAGCAGATGCACAGCTGCTTGCAGAGGCTACAAAGAAAATTTTTGGTTCTTTGAACAGACAAAGTGATGTACTAACTATGGAAGAAGAAGAGTCTGATGCAAAGGGTGCTTCTGAGAAAAATTTGGCAAATGATGGTAATGTTCCTGAATGGGCTCAAATGCTAGAACCTGTCAGAAAGCTACCAACAAATAAAGCAGTTCTTTCAGTGTTGGCTGATGTTGCTGGTGAAGGAGGGCAATCAAATCCCAGTAAAGGGCAGAAAAGGAAGATTGTTATATCAATTTCTGACATTATGATGAAACGATGTCGCATTGTATTGCGGCGTGCTGCTGCTGCCGATGATTCAAAGGTTTTTTGCAATTTGCTGGGAAGAAAATTGATAAATTCTTCCGATAATGATGATGAGGGGCTTCTTGGATCTCCAGCCATGGTGGCCCGCCCTCTTGACTTCCGCACTATTGACCTTAGACTAGCTGCCGGAGCTTATGGTGGATCTCATGACGCTTTTCTTGAGGATGTACGGGAGCTGTGGAACAATGTTCGTGTTGCTTTTGGGGATCAACCTGATTTACTCGAGTTGGCTGAAAAATTATCCCAAAACTTTGAATCATTATATAATGAGGAGGTTGTCATGAATATGCAAAAACTGATGGAGTATGCTAAGCTGGAATGCTTAACTGCAGAAATGAGAAAGGAAGTTGATGATTTTATTGAGTCAATGAAAGAGACTCCAAAGGCCCCTTGGGATGAGGGAGTCTGTAAAGTATGTGGCATTGATAGGGATGATGATAGTGTTTTACTATGTGATACTTGTGATGCTGAGTATCATACATATTGCTTAAACCCTCCCCTCGCAAGGATCCCAGAGGGAAACTGGTACTGTCCTTCCTGTGTTGATGGTAAACATGCAACTCAAGATGTTACAGAACGTACACAGGTTATTGGCAAACGCCGAAGTAAAAAATTCCAGGGTGAAGTTAATTCTCTTTACTTGGAATCCCTTACTCATTTGTCAGCTGTAATTGAAGAAAAAGAATACTGGGAGCACAGCTTGGCCGAGAGAACTTTCCTTCTCAAATTTTTATGTGATGAGTTGCTTAACTCTTCCATGATACGCCAGCACCTTGAGCAATGTGCAGAGTTGTCTGCTGAGTTACATCAGAAATTGCGTGCACATTCTGTAGAGTGGAAAAACCTGAAAACCAGAGAGGACGTTTTGTCCACAAAAGCAGCTAAAATTGATACTTTCTCATTAAATACTTCTGGAGAAGTTGGTCTTAGGGAAGGGGTTACTACTTCATTTTCAAATACTGCTAAATGTCTGGTCCAGCCACATACTGCAGTTGACAATCCTAGTAATTTTGGGGTATTTGATGATAGTCTGCCTTCAGAAGAGACAACTAAAGAAAAGTATAGGTTTGATAGTGTAGATAAAAGCATATCTGTGACAAATTCAGATTCCGATAGCCAAAATTTGAATTCCTTAGATGTAGAGGGACAATTTAGAAATGTCTCTGGTGGTGTGGAGTCTCAGTGTACTGATAAATCTCCCAAATCTTTTCCATCACCAAATATGTCTCAAGAAATAAATGGTTCTGTTGGAGCAGCTGATGCCCAGGGTAACCACCATAAATGTGAGGGAAGGGACATGTCTACACCTGTGACATGCCAGCAAGGTGGGGTGCCAGTTGATGCTTCACATATGGTTTTGAATGAGTCAGAACCCTATCACCTTGAGCTCAATGCCATCAAGCGTGATATTTCACTATTGCAAGACTCCATAACTAATGTAGTATCACAGCTGCTGAAGCTCTCTGTTCGCCGGGAATTTTTGGGCATTGATTCCATCGGTCGATTGTATTGGGCTTCAACTTTGCCTGGAGGACATTCACGTATAGTTGTTGATGCAAGTGCTGCACTGCTTCATGGAAAAGGAATGTCGTTTAGCAGAGACTATGTGGAGAAGTTTTCTGTTCTGCAGAATTGTTCACTAACTGAGAAGGATTCCTCTCCTTTCATGTCTCAGCTTAGAAATGCTTTGGTCAATAGTGCACCATGGATTGCTTATGAAACTGATGCTGAAATTGAAGAGCTCTTAGGTTGGCTGGACGATAATGACCCTAAAGAAAGGGAACTGAAAGATTCCATTATGCAGGGGCCAAGATCAAGATTCCAAGAGTTCCTTAATGCAAAGACCGAAGAGCAGGTTGAGGACCAGGGACCTGTTTCTATTCCCAGAAATAGAGAGAAAACAATATCTAACTCTCTTGTTACAAAGGCGACTTCCTTGCTGGAAAAGAAATACGGTCCCTTCTTTGAATGGGATATTGAGACGTGGAAGAAGCAAAATAAAAAGTCCAGAACAACTAATGATGAAAAGTTGTTTAGGTGTGAGTGCCTTGAACCCATATGGCCCTATAGGAGACACTGCACATATTGTCACAAAACTGTTTTGAGTGATGTTGAATTTGATGGACACAACGATGGAAAGTGTAATGCAGGTCTTCCGGTTGCAGAGAAGAATAGGAACAAAATTGGATCTTCTAAAGGAAAAGGGAACTTAACATGTGATGGCTCACGAGAGAAATTCAGAGCTGATGCAGAAACATCTGGAACCAAAATTGGTGGTGGTTCTAAGCTTAGCTCAAGAGTGATTAAATTTTCAAATGAAGAATCCACATGCCCATTTAATTTTGAAGATATATGTTCCAAGTTTGAGACAAGTGATTCCAACAAGGAACTTGTCAAAGAAATAGGTCTTATTGGTTCAGATGGTATCCCTTCCTTTGTTCCTTCTGTATCTCCTTTTGTTAGCGAGTATGCACAATTCTCAACTTCAAAGGATGACATTATTGGTATTTTGCCCAAACCAACGGAAAGCTGGGGTTCTCAGGGAAATACTGATGGAGCTGGTGCATGTCTTGATCATAATTCAGGAATTTCTACTGGTAGGTTAGCTGTCAACGAAAGCAATAAATCCATTAAATCCTCCTCCTCGGGAGAACAAAGAGATGGGAAATTCTCTTTTTGTGGTCCTGTTTCAGATATGGGAGATGGCTGCTGTGTGGTTCCTTTGTCGTCATTGAAACCATTAGTTGGAAAGGTTTCTCACATCTTGAGGCAACTGAAGATTAATCTGCTTGATATGGATGCTGCACTCCCGGCATTTGCTCTGAGACCATCAAAGGCCGAGTCTGACAGAAGACAGGCTTGGCGTGCATTTGTGAAATCTGCAGAGACTATATACGAGATGATTCAGGCGACATTTTCCTTAGAAGATATGATTAAGACGGAGTACTTGAGGAATGACTGGTGGTACTGGTCATCATTCTCAGCTGCTGCGAAATCTTCTACTTTGCCTTCCCTTGCCCTTCGCATATACTCTCTTGATTTAGCCATTATATACGAGAAAACGCCCAATTCTAGTCTTACTGACAGCTCTGAACCTTCTGGCACAGCAGAGACGAGACCACCGATGAATGTGGATGCAGAGAAATCCAAAGGAAGCCGGAAGTCAAACAGGAAAAGGAAGGAATCAGATGGTTGA 6252 0.424 MELPDSTGGDRNLNAPPPQPQHNNHHQDARSGLGIDLNEIPSPSSLFAETLPDSVTDVVRTYHENPGPPPGAPAALPSAYCACTTVCPFGAPVTYSNFYNGNATGFQKASGGLTQADRVGFEDILNHTQSITRKFEEVCTDFPLRIHSSNNNTAIIIPSRSPNEIFLQALKDFISERRGVLEEGWRVEFRQSVSSSELYAVYCAPDGKIFDSVYEVACYLGLMSGFNAVESEIRHERSLVSLSGSLSRKKKSTRSPVVNGFVEKRGTMMNSNCKDPSSEGLNVECASTRGNIAKPYESGRKEDGQSFPQQFENELPLQFKDFFVLSLGKVDVRPSYYDVNLICPVGYKSCWHDKITGSLFTCEVLEGGDSGPIFRIRRCSCSEFPVPVGSTILSLSKCCQLASQADEGNGKTNGSMDLDDGDNIQMMLQDPCVPTENDVLSCSANFSIKDTHTPDALGPATGSVQDNAIHSLPDEFNDGIGEFCVEERSSCSAWRVISQKLVDACKDLCKQKGTLKFYCNHVKNETCLHQWDLGNVKSDELDKFCGSLGSVGIPDVIYADSDLEGISEALRKWLEQDRFGLDVEFVQEVLEQLPGVESLQYELLNCRDNSSSLPTVENGFLVVEWREGSKHQEEALQGLYRRSKKASLTKKSFKEGRRPPLGKPLCSRAPGELIGDIFQAWELLERFNEVLDLQEPLSLDELEKELISPWFDGLDFLEKSERDMDLISEGTDGNCRPLLSLGGDTGPSGSMEGSHAFIQMETEAMKEAAQVKLASFTYARCFGVTLTKAHNSLLRVLIGELLSRVAVLVDPNSEPGETRTRRGRKKDMDSGLPAKRTKLNMLPINELTWPELARRYILAFLTMDGNLESAEITARESGKVFRCLRGDGGLLCGALTGVAGMEADAQLLAEATKKIFGSLNRQSDVLTMEEEESDAKGASEKNLANDGNVPEWAQMLEPVRKLPTNKAVLSVLADVAGEGGQSNPSKGQKRKIVISISDIMMKRCRIVLRRAAAADDSKVFCNLLGRKLINSSDNDDEGLLGSPAMVARPLDFRTIDLRLAAGAYGGSHDAFLEDVRELWNNVRVAFGDQPDLLELAEKLSQNFESLYNEEVVMNMQKLMEYAKLECLTAEMRKEVDDFIESMKETPKAPWDEGVCKVCGIDRDDDSVLLCDTCDAEYHTYCLNPPLARIPEGNWYCPSCVDGKHATQDVTERTQVIGKRRSKKFQGEVNSLYLESLTHLSAVIEEKEYWEHSLAERTFLLKFLCDELLNSSMIRQHLEQCAELSAELHQKLRAHSVEWKNLKTREDVLSTKAAKIDTFSLNTSGEVGLREGVTTSFSNTAKCLVQPHTAVDNPSNFGVFDDSLPSEETTKEKYRFDSVDKSISVTNSDSDSQNLNSLDVEGQFRNVSGGVESQCTDKSPKSFPSPNMSQEINGSVGAADAQGNHHKCEGRDMSTPVTCQQGGVPVDASHMVLNESEPYHLELNAIKRDISLLQDSITNVVSQLLKLSVRREFLGIDSIGRLYWASTLPGGHSRIVVDASAALLHGKGMSFSRDYVEKFSVLQNCSLTEKDSSPFMSQLRNALVNSAPWIAYETDAEIEELLGWLDDNDPKERELKDSIMQGPRSRFQEFLNAKTEEQVEDQGPVSIPRNREKTISNSLVTKATSLLEKKYGPFFEWDIETWKKQNKKSRTTNDEKLFRCECLEPIWPYRRHCTYCHKTVLSDVEFDGHNDGKCNAGLPVAEKNRNKIGSSKGKGNLTCDGSREKFRADAETSGTKIGGGSKLSSRVIKFSNEESTCPFNFEDICSKFETSDSNKELVKEIGLIGSDGIPSFVPSVSPFVSEYAQFSTSKDDIIGILPKPTESWGSQGNTDGAGACLDHNSGISTGRLAVNESNKSIKSSSSGEQRDGKFSFCGPVSDMGDGCCVVPLSSLKPLVGKVSHILRQLKINLLDMDAALPAFALRPSKAESDRRQAWRAFVKSAETIYEMIQATFSLEDMIKTEYLRNDWWYWSSFSAAAKSSTLPSLALRIYSLDLAIIYEKTPNSSLTDSSEPSGTAETRPPMNVDAEKSKGSRKSNRKRKESDG 2083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00033 2083 Gene3D - 315 417 - -
Vian8g00033 2083 ProSitePatterns Zinc finger PHD-type signature. 1155 1199 IPR019786 -
Vian8g00033 2083 Pfam Methyl-CpG binding domain 172 223 IPR001739 GO:0003677
Vian8g00033 2083 SMART PHD_3 1154 1200 IPR001965 -
Vian8g00033 2083 SUPERFAMILY Bromodomain 989 1109 IPR036427 GO:0005515
Vian8g00033 2083 Coils Coil 1273 1293 - -
Vian8g00033 2083 MobiDBLite consensus disorder prediction 815 832 - -
Vian8g00033 2083 MobiDBLite consensus disorder prediction 812 832 - -
Vian8g00033 2083 CDD PHD1_Lid2p_like 1154 1199 - -
Vian8g00033 2083 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1139 1223 IPR013083 -
Vian8g00033 2083 ProSiteProfiles FYR domain FYRN motif profile. 314 367 IPR003888 GO:0005634
Vian8g00033 2083 MobiDBLite consensus disorder prediction 2062 2083 - -
Vian8g00033 2083 Gene3D - 996 1119 IPR036427 GO:0005515
Vian8g00033 2083 MobiDBLite consensus disorder prediction 2042 2056 - -
Vian8g00033 2083 Pfam PHD-finger 1154 1200 IPR019787 -
Vian8g00033 2083 MobiDBLite consensus disorder prediction 2042 2083 - -
Vian8g00033 2083 SUPERFAMILY FYVE/PHD zinc finger 1143 1204 IPR011011 -
Vian8g00033 2083 MobiDBLite consensus disorder prediction 1 45 - -
Vian8g00033 2083 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1234 1278 IPR028942 -
Vian8g00033 2083 Pfam Bromodomain 1043 1098 IPR001487 GO:0005515
Vian8g00033 2083 ProSiteProfiles Zinc finger PHD-type profile. 1152 1202 IPR019787 -
Vian8g00033 2083 MobiDBLite consensus disorder prediction 12 28 - -
Vian8g00033 2083 ProSiteProfiles Bromodomain profile. 1045 1093 IPR001487 GO:0005515
Vian8g00033 2083 PANTHER OS02G0192300 PROTEIN 88 965 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00033 Vian-Chr8 446054 459189 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00033 89 2083 C2H2 Transcription Factor Family AT3G01460 43.453 0.0 1511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vian8g00033 Bromodomain 5.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00033 K22768 - gmx:100791814 3047.68