Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00032 ATGACAGTTATTATAACAGTGGTGCTAATATTTGTGGGATTTATGGTCCTGATCATATTTCATGTTTGTATTTCGGAGAGACTCTCTAGGAGAGGATCTATGGTTGAGAGGGGTGCAAATGGGGGAAGAAGCATGTCCATAGATGAGTTGGAGAAGCTTCCATGTTATGATTATGTTGCCAAAGGCAACACAAGCAGCCCTGTGGATTGTGCAGTTTGCTTGGAGAGCCTCATCACTGGAGATAACTGCAGGTTGTTGCCTATGTGCAAGCACAGTTTTCATGCTCAATGTGTGGACACATGGCTTCTTAAGACATCCTTATGCCCAATTTGCAGGTCTAATGCTCATTCTCACAGTGAAAACCAAGTTATAGGTAACAGTGACTACTTGGTAGCACCAAATAGTGTGTCTAGGGAGGGCCAAACTGCCACAAGAAGTCAGCAACATGACAATATGGTGGTCTTGGTACAGCTGAGAGAAAGCCTAGAAAATGGTCCATCAACAAATGTTGTCGTGGAAAATCCAACATTAGGAAGTCATAACTTGGTCAGAGAGGAGTAG 561 0.4332 MTVIITVVLIFVGFMVLIIFHVCISERLSRRGSMVERGANGGRSMSIDELEKLPCYDYVAKGNTSSPVDCAVCLESLITGDNCRLLPMCKHSFHAQCVDTWLLKTSLCPICRSNAHSHSENQVIGNSDYLVAPNSVSREGQTATRSQQHDNMVVLVQLRESLENGPSTNVVVENPTLGSHNLVREE 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00032 186 FunFam RING-H2 finger protein ATL2K 45 118 - -
Vian8g00032 186 MobiDBLite consensus disorder prediction 166 186 - -
Vian8g00032 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 117 IPR013083 -
Vian8g00032 186 ProSiteProfiles Zinc finger RING-type profile. 70 112 IPR001841 -
Vian8g00032 186 SMART ring_2 70 111 IPR001841 -
Vian8g00032 186 SUPERFAMILY RING/U-box 69 124 - -
Vian8g00032 186 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 2 147 - -
Vian8g00032 186 Pfam Ring finger domain 69 112 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00032 Vian-Chr8 433675 434235 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00032 1 122 C3H Transcription Factor Family AT5G42200 32.283 3.53e-17 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00032 - K15692 gmx:102667575 312.768