Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00019 ATGTCGGAAGGGTTTGCGATCGAATTGCACTTGGATCCGGCGTTGGAGAATCAGGTGCTGAAGGCGTGGAACGTTCTCGCGCGCCGGCAAATCACCACTCACCTCATCGAGATGAAGTCGCGCCCTCACATAACGCTCTTCTCCGCACCCTTTCTAGAACCTTCCAAGCTCGAATCGCTTCTCAGAACCTTCGCATCCAAGCACGATCCTCTTTCTCTCTCCTTCTCCTCCGTCGGCACCTTTCCCAACCACGCCGACAACCTGCTCTTCCTGGCGCCCACGCCCTCCCTCTCCCTCCTCCAATTCCAGTCCCACCTCTGCGACGCCATCAGAAAAGAAGGTATTGAGATCTCCGACGACTTCGCCTTCGATTCCTGGATACCTTACTGCTCGGTCGCACACCACGTCGCCAAAAACCAAATGCCCGAGGCTTTCTCTCTCTTGCGGGAACTTAAGCTGCCGGTTTCCGGTTACGCTACGGACATCGCGCTCGTGCAGTTCTCTCCGGTTAGCGAACTCTTCTCCTTTGTGCTCGGCAACAATGTAGATTCCTGA 555 0.5568 MSEGFAIELHLDPALENQVLKAWNVLARRQITTHLIEMKSRPHITLFSAPFLEPSKLESLLRTFASKHDPLSLSFSSVGTFPNHADNLLFLAPTPSLSLLQFQSHLCDAIRKEGIEISDDFAFDSWIPYCSVAHHVAKNQMPEAFSLLRELKLPVSGYATDIALVQFSPVSELFSFVLGNNVDS 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00019 184 SUPERFAMILY LigT-like 6 166 IPR009097 -
Vian8g00019 184 Pfam 2'-5' RNA ligase superfamily 39 166 - -
Vian8g00019 184 PANTHER - 1 182 - -
Vian8g00019 184 Gene3D Cyclic phosphodiesterase 5 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00019 Vian-Chr8 281880 282434 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00019 1 184 Calmodulin-binding Proteins AT5G40190 60.326 3.71e-77 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00019 - - vum:124840426 361.688