Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00017 ATGCATGGGTGTGGTGGTGACCAGTGGAAACACAATCGGCACATGTGGCCTGTACCTGCTAACGCGACCACTGTAGCCATCGATTCTTCACCGTCTCAATTTATATGCAAAGATGGACGCAAGATTCGCGCTGGTGATTGTGCACTCTTCAAGCCACCTAGGGACTCCCCTCCTTTTATTGGAATAATTCGCAAGCTAACTTATGATAAACAAGAAAGTCCAAGTTTAGAAGTGCATTGGCTTTACCGACCTGCTGATTTAAAACTTGCTAAAGGAATTGTGCTGGAAGCTGCACCGAACGAAGTTTTTTACTCCTTTCACAAGGATGAAACACCTGCTGCATCATTACTCCATCCGTGTAAAGTCGCATTTCTTCGTAAAGGTGTTGAACTTCCTTCAGGGATATCCGCATTTGTCTGTCGACGAGTTTATGACATTGAGAACAACTGTTTATGGTGGCTAACTGATAAGGACTACCTTAATGAACAACAGGAAGAAGTTAACCAGCTATTAGACAAGACAAAACTAGAAATGCATGGGGCTGTGCAGTCAGGAGGCCGTTCTCCAAAACCCTTGAATGGTCCAGCATCAACACAGTCTTTGAAATCTGGTTCTGACAACATACAAAATAGTTCTTCGTTTGGTGCACAGGGTAAGGGTAAAAAGAGAGAGCGGGGTGATCAGGGTTCTGATTCATCTAAAAAGGAGCGGTTGTTTAAGATAGAAGATGGAGATTCTGGTCAGTTTAGACCGGAGAGCATGTTAAAGTCCGAGATTGCTAAAATAACTGATAAAGGTGGGCTTGTGGACTTTGAAGGAGTTGAAAAACTGGTACAGCTTATGCAGCCTGACAGTGCTGATAAAAAGATTGATTTACCTGGGCGGATAATGCTTGTTGATGTAATTGCACTTACAGACCGGTACGATTGTCTGGGCTGGTTTGTACAGCTTAGGGGTTTACCTGTATTGGACGAATGGCTGCAGGAGGTCCACAAGGGCAAAATTGGTGATGGAAATCCCAAAGAAGGTGACAAGTCTGTTGATGATTTTTTATTAGCTTTACTGCGTGCATTGGATAAGCTTCCTGTGAACCTTCATGCACTGCAGACCTGTAATGTTGGAAAGTCTGTCAATCATTTACGCACGCACAAGAATGCTGAAATTCAGAGGAAAGCCCGGAGTTTAGTGGACACATGGAAGAGGCGTGTGGAAGCTGAAATGAACATGAATGATTCAAAGTCTGGTTCAAACCGTGCTGTTTCTTGGCCAGCAAAGCCAGCAAACTCGGAGTCTCCTCATGTTGGAAATAGGAAAACAGGTGGGTCCTCTGATAACGTCGTGAAGAGCTCTGTAATTCAACCCTCATTATCTAAAAGTTCCCAATCTAAGTTAAGTTCTGGAGAAGCTTTGTCAAAGTCTTCATCTCCTGGCTCTACTAAATCATTGACTACCCCCGCAGGTGTGAATTCAAAAGATCAAAACAGTAAATTCTTTGTTGGAGCTGCAACGTCAGATCTACCTTTGACACCTATCAAAGAGGAGAGGAGCAGCAGTTCTAGTCAATCTCAAAATAACAGTATAACTTGTTCTAGTGAACATGCTAAGACTATTGGTTCTTGCAAGGAAGATGCAAAGAGCTCCACTGCAGTGTCAATGAGTGGAAGTAAAATTCATGGTTGTACATCTCGAATTCGCAAGTCAAGCAATGGTGTACATGGGGCTGGTGCTGCAGTAGGTCAAAAGGAGCACAACTCTGCAAAACATTCAACAAGAAATTCACCTTCTGAGAAAGTATCACCAACTCGAGCATCCCACGAAAAATCAGTTGACCAGGCCATTGCCGATCAAGGGAACAACCAGCGATTGATTCTTAGGTTGCCAAACACTGGTCGCAGTCCATCAAGGGGAGCTAGCGGGGGCTCTTTTGAAGAACCAGCTACAACGAGCAGCAAAGCTTCATCTCCTGCAGACCGGAATGATAATCAGGACAGAAGAGTGAAAACTAAGACCGAGTGTTTGCTGACCCATGTGTCAAATATGATGAATGAGGCTTGTGATGCTAATGATGCTTTGATTGGTGATGAAGGTAAGGGTACTCCAATAGTTGATGAGCGAAGCAGGGCAAATGAAGATAGTGATAAGGTATTGGAAACATCAAAGCCGACTAGTTTGCCATCTGGGTTTGTTTCCAGATCAGGGCAGACTTATGATGCTTCTTTAAGCCCCATGAATGCATTAGTTGAAAGCTGTGTAAAGTTTTCTGAAGCAAGTTCATCCGTTTCCCATGGAGATGATGGGATGAACCTACTAGCTACTGTGGCTGCTGGGGAAATATCCAGATCAGAAAATGCGTCACCTGTGGCATCCCCCGAGAGAAAGTCTCCTGCAGGAGATGAAATGTGCTCAGGCAATGATTTGAAGTTAAAGCATTCTGGTGAAGCAGCTGTTCGCACTCTTTCAGAGTTGAATGGTAGGGCTACAGGAGAGCATCCTTTGAATACAGTTGATTCATTGCAGATAAAAAATGAGTTGAGGCATCCTGCCATGACTCTGTCACGTGATTTTTCAGGGGATGGTGAAACCATTTCATCTTCCCATGACACTAATATACATGTCTCCCCTACAAATTTGTCACAAAATGTTGAAGGTCCATGCTTACGGCCCGAAACCAAAGAAAATGCTTCTGTCACAATTCTGACAGCTAAAAAGGAGAGTAATGCAGACACTGGAGTTTCAGACTCTAAATTAATGCCAAGGGCCTACTCTTTGGATGATGATCAGAAGGTTGATCACATGAATGAGGAGATCATTGAGGATGAGAAAATGTTGGTTTCAAAACCTGTTACAAATGTTGAGTCAGAAAACGAATCTGGTGAAAAGCAGCCGGAGTTAACTTCAGGTGTGGATAATGAGAACCAGATTAGTCTGGAGAAAGCAACTGGTACTGGAATACTAGCGCAAAAGGCCTCTCCAATTGCTGAAAACTGTGAGTCTGCATATTTAAAAAAGGAGTCACCTGCTTCTGGCAATGCTTTAATTGTACCCAAGGATGATAGTGCTGATGACATGAAGTCAGTTGTGATTGAGCCTGAGGTAAGACCAATGGACCAGGATTCTTCTGCTCCAGATGATTCTAATGAATGTGCTGAAGTTAATACGGGCAAAAAAGAAACCATTGGTCCGTGTTCTGGTTCATCAGTTCAGCCTGATTTACAAGGAGTGTCTAGGACAGAGAGTGAAGTGTCCAAATCATGTGAGCAAAAGCTTGATGCAAATCTGTCTGAAGTATCAGGAGAGAGGCATGCATGCTCTGCAGCTGGTGCTGATGCAGCTGTGAAACTTGACTTTGATTTAAATGAAGGCTTTCCTGTTGATGATGTAAGTCAAGGGGAGATTGCCAGACAGGATGATCCTATCACATCATCTGCAGTTCATGTTCCTTGCCCATTGCCTTTTCCTATTTCGTCCATCTCTGGTGGCTTCCACCCTTCAATTACCGTTGCATCCGCTGCTAAAGGGCCTGTTATTCCACCAGAAAACCCATTGAGGATCAAGGGGGAGCTTGGATGGAAAGGATCTGCTGCCACCAGTGCATTTCGACCAGCTGAACCTAGGAAAAATGCTGAGATGCAGTCCTCTACTAATGATATTAGTTCTGTTGATGTCACTTCTATCAAACAAAATCGCGCCCCCTTAGATTTTGACTTGAATGTGGCAGATGAAAGATGTTTTGAAGATGTTGGTTCACATGGTTCTTTAGATTCTGGACCACATGATCGTAGTGTGGGACTTGATCTTGATTTAAACAGAGTTGATGAGACTCCTGAAATTGGTACTTTCTCTATAAGCAAACTGGATATCCCTGTTTTACCAAGCAAGCCGTCATTGTCTAGTGGGTTGTCTAATGGTGGAAGTGTCTCAAGAGACTTTGACTTAAATAACGGGCCTGGCCTTGAAGAAGTTGGTAGTGAAGTCCCTACACGTAGTCAGCAGCAGATGAAAAATTCTGTGCCGTTTCCAAGTGCTGTTCATAGCACGAGAACAAACAATGCTGAATATGGAAATTATTCTGCATGGTTTCCTCCTGGAAATTCCTATTCTGCAATTACTGTCCCGCCACTTCTATCTGGTAGAGGGGAGCAGAGTTATGTTACTGGTGCTGGGGCACAACGAATAATGGGTCCAACAGGTAGCACTCCTTTTGGTCCTGAAATCTACAGGGGATCAGTACTCTCATCCTCACCGGCTGTTGCTTATCCATCCACTACAGCTTTTCCATATCCTGGATTTCCATTTGAAACCAATTTTCCATTATCCTCAAACTCCTTTTCTGGTTCAACTGCATTTATGGATTCGTCGAATGTGGGCGGGCTATGTTTTCCTACCATGCCTACACAGCCAGTTGGGCCTGGTGGTGTCGTTTCATCCACATATCCTCGTCCATATGTTATGAGTCTTCCAGGTGGTACTAGTAATGTGATACCTGACAGCAGAAAATGGGGAAGTCAAAGTCTGGATCTTAATTCAGGGCCTGGTGTAGCAGATACAGAACGGAGGGACGAAAGATTGCCTTCAGGATTGCGGCAAATGTCTGTCCCGAACCCACAAGCCTCAATTGAGGACCCCTTGAAGATGTTTCAGATGGCAGGTGCTGCTGCATTGAAAAGAAAAGAGCCTGATGGTGGTTGGGATGCTGAAAGATTCGGTTATAAGCAACACTCACGGCAATAG 4731 0.4405 MHGCGGDQWKHNRHMWPVPANATTVAIDSSPSQFICKDGRKIRAGDCALFKPPRDSPPFIGIIRKLTYDKQESPSLEVHWLYRPADLKLAKGIVLEAAPNEVFYSFHKDETPAASLLHPCKVAFLRKGVELPSGISAFVCRRVYDIENNCLWWLTDKDYLNEQQEEVNQLLDKTKLEMHGAVQSGGRSPKPLNGPASTQSLKSGSDNIQNSSSFGAQGKGKKRERGDQGSDSSKKERLFKIEDGDSGQFRPESMLKSEIAKITDKGGLVDFEGVEKLVQLMQPDSADKKIDLPGRIMLVDVIALTDRYDCLGWFVQLRGLPVLDEWLQEVHKGKIGDGNPKEGDKSVDDFLLALLRALDKLPVNLHALQTCNVGKSVNHLRTHKNAEIQRKARSLVDTWKRRVEAEMNMNDSKSGSNRAVSWPAKPANSESPHVGNRKTGGSSDNVVKSSVIQPSLSKSSQSKLSSGEALSKSSSPGSTKSLTTPAGVNSKDQNSKFFVGAATSDLPLTPIKEERSSSSSQSQNNSITCSSEHAKTIGSCKEDAKSSTAVSMSGSKIHGCTSRIRKSSNGVHGAGAAVGQKEHNSAKHSTRNSPSEKVSPTRASHEKSVDQAIADQGNNQRLILRLPNTGRSPSRGASGGSFEEPATTSSKASSPADRNDNQDRRVKTKTECLLTHVSNMMNEACDANDALIGDEGKGTPIVDERSRANEDSDKVLETSKPTSLPSGFVSRSGQTYDASLSPMNALVESCVKFSEASSSVSHGDDGMNLLATVAAGEISRSENASPVASPERKSPAGDEMCSGNDLKLKHSGEAAVRTLSELNGRATGEHPLNTVDSLQIKNELRHPAMTLSRDFSGDGETISSSHDTNIHVSPTNLSQNVEGPCLRPETKENASVTILTAKKESNADTGVSDSKLMPRAYSLDDDQKVDHMNEEIIEDEKMLVSKPVTNVESENESGEKQPELTSGVDNENQISLEKATGTGILAQKASPIAENCESAYLKKESPASGNALIVPKDDSADDMKSVVIEPEVRPMDQDSSAPDDSNECAEVNTGKKETIGPCSGSSVQPDLQGVSRTESEVSKSCEQKLDANLSEVSGERHACSAAGADAAVKLDFDLNEGFPVDDVSQGEIARQDDPITSSAVHVPCPLPFPISSISGGFHPSITVASAAKGPVIPPENPLRIKGELGWKGSAATSAFRPAEPRKNAEMQSSTNDISSVDVTSIKQNRAPLDFDLNVADERCFEDVGSHGSLDSGPHDRSVGLDLDLNRVDETPEIGTFSISKLDIPVLPSKPSLSSGLSNGGSVSRDFDLNNGPGLEEVGSEVPTRSQQQMKNSVPFPSAVHSTRTNNAEYGNYSAWFPPGNSYSAITVPPLLSGRGEQSYVTGAGAQRIMGPTGSTPFGPEIYRGSVLSSSPAVAYPSTTAFPYPGFPFETNFPLSSNSFSGSTAFMDSSNVGGLCFPTMPTQPVGPGGVVSSTYPRPYVMSLPGGTSNVIPDSRKWGSQSLDLNSGPGVADTERRDERLPSGLRQMSVPNPQASIEDPLKMFQMAGAAALKRKEPDGGWDAERFGYKQHSRQ 1576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00017 1576 ProSiteProfiles BAH domain profile. 40 155 IPR001025 GO:0003682
Vian8g00017 1576 MobiDBLite consensus disorder prediction 218 249 - -
Vian8g00017 1576 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 309 417 IPR035441 -
Vian8g00017 1576 MobiDBLite consensus disorder prediction 1058 1081 - -
Vian8g00017 1576 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1576 - -
Vian8g00017 1576 SMART BAH_4 40 155 IPR001025 GO:0003682
Vian8g00017 1576 MobiDBLite consensus disorder prediction 698 717 - -
Vian8g00017 1576 MobiDBLite consensus disorder prediction 1295 1309 - -
Vian8g00017 1576 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 272 407 IPR035441 -
Vian8g00017 1576 MobiDBLite consensus disorder prediction 780 800 - -
Vian8g00017 1576 ProSiteProfiles TFIIS N-terminal domain profile. 321 406 IPR017923 -
Vian8g00017 1576 MobiDBLite consensus disorder prediction 510 568 - -
Vian8g00017 1576 MobiDBLite consensus disorder prediction 432 492 - -
Vian8g00017 1576 Pfam BAH domain 42 147 IPR001025 GO:0003682
Vian8g00017 1576 MobiDBLite consensus disorder prediction 178 252 - -
Vian8g00017 1576 CDD TFIIS_I 329 404 - -
Vian8g00017 1576 MobiDBLite consensus disorder prediction 691 731 - -
Vian8g00017 1576 MobiDBLite consensus disorder prediction 409 424 - -
Vian8g00017 1576 MobiDBLite consensus disorder prediction 1032 1081 - -
Vian8g00017 1576 MobiDBLite consensus disorder prediction 611 656 - -
Vian8g00017 1576 Pfam TFIIS helical bundle-like domain 354 403 IPR017923 -
Vian8g00017 1576 MobiDBLite consensus disorder prediction 1557 1576 - -
Vian8g00017 1576 MobiDBLite consensus disorder prediction 949 970 - -
Vian8g00017 1576 MobiDBLite consensus disorder prediction 1295 1341 - -
Vian8g00017 1576 MobiDBLite consensus disorder prediction 190 217 - -
Vian8g00017 1576 MobiDBLite consensus disorder prediction 1324 1341 - -
Vian8g00017 1576 MobiDBLite consensus disorder prediction 508 666 - -
Vian8g00017 1576 MobiDBLite consensus disorder prediction 1555 1576 - -
Vian8g00017 1576 MobiDBLite consensus disorder prediction 858 883 - -
Vian8g00017 1576 SMART TFS2_5 327 405 IPR003617 GO:0005634
Vian8g00017 1576 MobiDBLite consensus disorder prediction 1195 1215 - -
Vian8g00017 1576 Gene3D - 24 253 IPR043151 -
Vian8g00017 1576 MobiDBLite consensus disorder prediction 406 492 - -
Vian8g00017 1576 MobiDBLite consensus disorder prediction 1498 1540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00017 Vian-Chr8 269267 274886 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vian8g00017 BAH 3.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00017 - - gmx:112998769 2520.35