Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00006 ATGGCATCAGGTGGAACCGAAACTTTTCCAGATTTGGGTAAAAACTGCCAGCACCGCGACTGCAACCGCCTCGATTTTCTTCCTTACATCTGCGACGGTTGCCAACAGCACAGATCATACAAGTCCCACGCGTGCCCGAAATCTGACCTAAGCAGAAAAGTGATTGTTTGCCAAACATGTTCCATGTCAATTGAGACCACCGGCTACGTGGGACAAGACGAGGATGCAATCTTGGAGAAGCACCACAAGTCTGGTAACTGTGATCCCACAAAGAAGAAGAAACCCATTTGCCCTGTCAAGGGATGCAAGGAGATTTTATCAATATCTAACACCAGCACATGTAAAAATTGCCAACTGAAGGTGTGCCTCAAACACCGTTTTCCTTCTGATCATGCTTGTAACAGAGGAGTTTCAGCTTCTTCATCTACAGCTGCTAATGGTGGGTTGAAGAATTTTCTTAGCTGCTTTTGTTTCAAGAACAGAACAACAGAAAAGGCCTAG 501 0.4551 MASGGTETFPDLGKNCQHRDCNRLDFLPYICDGCQQHRSYKSHACPKSDLSRKVIVCQTCSMSIETTGYVGQDEDAILEKHHKSGNCDPTKKKKPICPVKGCKEILSISNTSTCKNCQLKVCLKHRFPSDHACNRGVSASSSTAANGGLKNFLSCFCFKNRTTEKA 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00006 166 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 8 139 - -
Vian8g00006 166 SUPERFAMILY AN1-like Zinc finger 9 48 IPR035896 -
Vian8g00006 166 SUPERFAMILY AN1-like Zinc finger 89 139 IPR035896 -
Vian8g00006 166 Gene3D - 2 59 IPR035896 -
Vian8g00006 166 Gene3D - 72 151 IPR035896 -
Vian8g00006 166 ProSiteProfiles Zinc finger AN1-type profile. 91 141 IPR000058 GO:0008270
Vian8g00006 166 Pfam AN1-like Zinc finger 97 134 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00006 Vian-Chr8 94749 95743 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00006 1 161 C2H2 Transcription Factor Family AT3G28210 54.491 3.31e-61 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00006 - - var:108345238 353.599