Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g02073 ATGGAGCCACCAGCAATGTACGGACACTCCCAGCCACTGAACATGCCTCCGCAGATCTCTGCCGCCGAAAGCAACGGCTCCGGCCCCGAGCCCGCCCTCGACGCCCACCACCACATTCACTACGAAACTCACGCGCTCGAAAACGGTGCCGCCGGTGCCATGGTCGTTGTCGAGGATGTCACTTCCGATGCGGTCTACGTCTCCGGCGGTGGAGGGCCCGAAGAGTCCAGTCAGCTTACGCTGTCGTTTCGTGGCCAAGTTTACGTCTTCGATGCTGTTACGCCTGATAAGGTTCAAGCGGTGTTGTTACTGTTGGGTGGATGTGAACTGTCTTCGAGTGGTTCGCCATGTGTGGATGCGGTGCCTCAACAGAATCAGAGGGTATTTTCTGATAATAGAAGAATATTATATATTATTCACACCCGCTTGCACTTGTATCGCTTTACAATTGATTTATTAGTAACATCACCTGATGCAGAGTACTTTGTTCCACCAGATATTGATAAAGGTTCAATGGAATATCCTGCAAGATGTAGTCTACCACAGCGAGCTGCGTCGTTAGATAGGTTCAGGAAGAAGAGGAAAGAGCGATGTTTTGATAAGAAAGTGAGATATGGTGTACGGCAAGAAGTTGCGCTCAGGATGCACCGTAATAAGGGGCAATTCACTTCTTCTAAGAAACAAGATGGAGCTAATAGTTATGGTACAGACCAAGATTCAGGACAGGATGATAGTCAATCAGAAACCTCATGCACACATTGTGGCACTAGTTCAAAATCCACCCCAATGATGCGGCGAGGGCCGTCTGGTCCAAGGTCACTTTGCAATGCTTGTGGGCTTTTCTGGGCAAATAGGGTAGTTGTTGGTGTTCCACCTTTTGACGATGTTATTGTGCAGGGTGCTTTAAGAGACCTTTCCAAGAGAAATCATGAACAGTCTCTTGTACCAGTCGATGATGGTAACGTCTCAGATTGTCGGACTGCCGCCAACCCTGCGCATAACAATCTGGCTGCATACTCAGAGCATGATAATCCTGCTTTGGTAGCTGATCGTAAAGTTTTCCAGTCCCAGAAAATGCTCGAGTAG 1086 0.4871 MEPPAMYGHSQPLNMPPQISAAESNGSGPEPALDAHHHIHYETHALENGAAGAMVVVEDVTSDAVYVSGGGGPEESSQLTLSFRGQVYVFDAVTPDKVQAVLLLLGGCELSSSGSPCVDAVPQQNQRVFSDNRRILYIIHTRLHLYRFTIDLLVTSPDAEYFVPPDIDKGSMEYPARCSLPQRAASLDRFRKKRKERCFDKKVRYGVRQEVALRMHRNKGQFTSSKKQDGANSYGTDQDSGQDDSQSETSCTHCGTSSKSTPMMRRGPSGPRSLCNACGLFWANRVVVGVPPFDDVIVQGALRDLSKRNHEQSLVPVDDGNVSDCRTAANPAHNNLAAYSEHDNPALVADRKVFQSQKMLE 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g02073 361 Pfam GATA zinc finger 251 284 IPR000679 GO:0006355|GO:0043565
Vian7g02073 361 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 245 287 - -
Vian7g02073 361 ProSitePatterns GATA-type zinc finger domain. 251 278 IPR000679 GO:0006355|GO:0043565
Vian7g02073 361 Gene3D - 241 313 IPR013088 GO:0006355|GO:0008270
Vian7g02073 361 MobiDBLite consensus disorder prediction 1 34 - -
Vian7g02073 361 MobiDBLite consensus disorder prediction 224 264 - -
Vian7g02073 361 SMART GATA_3 245 312 IPR000679 GO:0006355|GO:0043565
Vian7g02073 361 ProSiteProfiles GATA-type zinc finger domain profile. 245 281 IPR000679 GO:0006355|GO:0043565
Vian7g02073 361 ProSiteProfiles Tify domain profile. 72 107 IPR010399 -
Vian7g02073 361 MobiDBLite consensus disorder prediction 216 269 - -
Vian7g02073 361 SMART tify_2 72 107 IPR010399 -
Vian7g02073 361 PANTHER GATA TRANSCRIPTION FACTOR 28 7 318 IPR045280 GO:0006355
Vian7g02073 361 CDD ZnF_GATA 250 285 IPR000679 GO:0006355|GO:0043565
Vian7g02073 361 Pfam CCT motif 183 225 IPR010402 GO:0005515
Vian7g02073 361 Pfam tify domain 73 106 IPR010399 -
Vian7g02073 361 ProSiteProfiles CCT domain profile. 183 225 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g02073 Vian-Chr7 35178430 35182017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g02073 73 350 Tify Gene Family AT4G24470 49.664 5.91e-82 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vian7g02073 CCT 1.9e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g02073 - - pvu:PHAVU_008G182900g 535.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g02073 7 35178430 35182017 Vian7g02073 7 35178430 35182017 ECH
Vian7g02073 7 35178430 35182017 Vian4g01695 4 32984382 32987826 PCT