Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g02066 ATGGTGTGCAGGATTGTAGGAACAAGTTTTAGTGTGATAGTGGAAAATGAGAAAGAGGTTGAAATCTCATTCACAAGATTTTACTCCTACACCATCTTTGAACATTTACAGGAGTGGCCTGCTTTCAACATACCTCAAATAAGGACTGTTTACAAACTTAGTAAAGAAAAGTTTCATTACATGGTGGTGTCTGATAATAGACAAAGATTTATGCCTCTCCCTGATGACAGATTGCCAGGAAGAGGGGAAGAACTTGTTCCACCAGAAGCAGTTTTGCTTGTTAATCCTTTGGAGCCAGAGTTTAAGGGAGAGGTTGATGACAAGTACCAATACTCAAGTGAAAACAAAGATCTTATGGTTCATGGATGGATAAGTTCTCAATCTCAAACAGACCCATTTGTAGGGTTTTGGGTAATCATACCAAGCAATGAGTTTCGTTCAGGTGGCCTAGTAAAACAGAACCTTACTTCCCATGTCGGCCCAATAAGCCTAGCTGGATACCAATTTTGGAGCAAAGCAAACGAGAAAGGATACTTCTCAATCGAGAATATACGCAGTGGGGCTTACAATCTCTACGCATGGGTTCCAGGTTTCATTGGAGAGTATTGGAGTAATTTTCTCCTCACCATAACACCAGGTTGTGAAATTGATGTTGGTGAGATTGTTTTTGAGGCTCCAAGAGATGGCCCAACATTATGGGAGATAGGCATTCCAGATCGTTCTGCTGCTGAATTCTATGTTCCTGATCCCAATCCCAACTACATCAATAAGCTTTATGTTCATCATCCAGACAAGTATAGGCAATATGGGTTGTGGGAAAGGTATGCAGAATTATACCCAAATGAAGATTTAATTTACACTGTGGGTGTAAGTGATTATTCAAAAGATTGGTTCTTTGCACAGGTCACAAGAAAGAAAGAAGATGGCAGTTACCAAGGAACTACGTGGCAAATTAAGTTCAACCTCGATGACACAGAGGCAAGTAAAATCTACAAACTGCGGTTGGCACTTGCAAGTGCAAATGTGTCAGAATTACAGGTTAGAGTGAATGATCCAGAACAAGACCCTCCTGTGTTTACTACAGGGGTGATTGGAAAAGACTTTTCAATAGCTAGACATGGAATTCATGGACTCTATTGGCTATTCAACATTGATGTGTCTGGGTTTTTGCTAGTAAAAGGTGTTAACACTCTGTTTTTAACTCAAACTGTGGCAAATGGTCCCTTGGCTCGCTTTCAGGGAGTAATGTATGATTATATACGCCTAGAAGGTCCTAACCCTTTTGCTGCTATAAAAGAGAATTAA 1305 0.4023 MVCRIVGTSFSVIVENEKEVEISFTRFYSYTIFEHLQEWPAFNIPQIRTVYKLSKEKFHYMVVSDNRQRFMPLPDDRLPGRGEELVPPEAVLLVNPLEPEFKGEVDDKYQYSSENKDLMVHGWISSQSQTDPFVGFWVIIPSNEFRSGGLVKQNLTSHVGPISLAGYQFWSKANEKGYFSIENIRSGAYNLYAWVPGFIGEYWSNFLLTITPGCEIDVGEIVFEAPRDGPTLWEIGIPDRSAAEFYVPDPNPNYINKLYVHHPDKYRQYGLWERYAELYPNEDLIYTVGVSDYSKDWFFAQVTRKKEDGSYQGTTWQIKFNLDDTEASKIYKLRLALASANVSELQVRVNDPEQDPPVFTTGVIGKDFSIARHGIHGLYWLFNIDVSGFLLVKGVNTLFLTQTVANGPLARFQGVMYDYIRLEGPNPFAAIKEN 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g02066 434 SUPERFAMILY Galactose-binding domain-like 228 423 IPR008979 -
Vian7g02066 434 CDD RGL4_M 166 221 IPR029413 -
Vian7g02066 434 Gene3D - 20 196 IPR014718 GO:0030246
Vian7g02066 434 Gene3D - 229 423 - -
Vian7g02066 434 SUPERFAMILY Starch-binding domain-like 162 219 IPR013784 GO:0030246
Vian7g02066 434 Pfam Polysaccharide lyase family 4, domain III 231 422 IPR029411 -
Vian7g02066 434 CDD RGL4_C 233 423 - -
Vian7g02066 434 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 166 426 - -
Vian7g02066 434 Pfam Rhamnogalacturonate lyase family 27 105 IPR010325 -
Vian7g02066 434 Pfam Polysaccharide lyase family 4, domain II 161 217 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g02066 Vian-Chr7 35025153 35029400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g02066 166 425 Polysaccharide Lyase AT4G24430 66.031 3.05e-123 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g02066 K18195 - gmx:100815677 483.026