Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g02063 ATGGGGAGAGGAAAGATCGTGATAAGGAGGATCGACAATTCGACGAGTAGGCAAGTCACGTTCTCGAAACGAAGGAACGGTTTGCTGAAGAAGGCGAAGGAGCTTGCGATCTTGTGCGATGCTGAAGTCGGAGTTATGATTTTCTCCAGCACCGGAAAACTCTACGATTTCGCCAGCTCCAGCATGAAATCAGTTATTGACCGATACAACAAATCAAAAGAAGAAAATTGTCAACTTGGGAGTTCGGCCTCCGAAATTAAGTTTTGGCAAAGGGAGGCAGCAATGTTAAGGCAACAATTACACAATTTGCAAGAAAGCCACCGAAAAATCATGGGGGAGGAACTGTCAGGTTTGACAGTCAAAGAATTACAAAATTTGGAGAACCAATTAGAAATTAGCCTTCGCGGTGTCCGTATGAAAAAGGATCAACTTCTAATGGATGAAATACAAGACCTAAATCGAAAGGGAAACCTCATACGCCAAGAAAATGTGGAACTGTATAAGAAGGTAAACCTAATTTGTCAAGAAAACATGGAATTGAAAAAGAAGGTCCATGGAACAAAAGATGACAGCGAAACAAACAGAGATTATGTTCTCACAAATGGTCTAGGCATAGGAGAGGATTTGCATGTGCCCGTGAATCTCCAGCTAAGCCAGCCACAGCAACACTATAAGGCTCCTTCAGGAACTGCAAAATTGGGCAGATTGCAATTGCATTGA 720 0.425 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKLYDFASSSMKSVIDRYNKSKEENCQLGSSASEIKFWQREAAMLRQQLHNLQESHRKIMGEELSGLTVKELQNLENQLEISLRGVRMKKDQLLMDEIQDLNRKGNLIRQENVELYKKVNLICQENMELKKKVHGTKDDSETNRDYVLTNGLGIGEDLHVPVNLQLSQPQQHYKAPSGTAKLGRLQLH 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g02063 239 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677|GO:0046983
Vian7g02063 239 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vian7g02063 239 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Vian7g02063 239 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Vian7g02063 239 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vian7g02063 239 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vian7g02063 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vian7g02063 239 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 190 - -
Vian7g02063 239 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vian7g02063 239 MobiDBLite consensus disorder prediction 219 239 - -
Vian7g02063 239 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Vian7g02063 239 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vian7g02063 239 Coils Coil 86 106 - -
Vian7g02063 239 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vian7g02063 239 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vian7g02063 239 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g02063 Vian-Chr7 34906624 34927274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g02063 1 230 MADS-box Gene Family AT2G22630 60.759 1.19e-95 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vian7g02063 K-box 3.5e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g02063 K09264 - gmx:100812413 437.958