Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g02042 ATGGCTCTAAGAAGAGAACCATGGGATACCAATCCGTGTTCACAAGAAAACCAGCTTTTCTCTAATGCTTGGAGTTTTGATTGTTTTGATCAAAACTATCAAGCTTTTCCTTCAAATTCTTTCTCTTTGCAAGAAGTGCCTCAGAGTTACAACTTCGACTACACCTTCAATGAAATCTACAGTTCCTTATTTAATGAGTTTTCTGCACCTCAGATTGTAGATTCATCTTATAGCACCCTTGATGCTTCACATATTAGCACCCCTTCATTTGTTCCTCATGAAGATTATCCATTGTCTTTGATGGAAGAAGAAGATCCGGGTTTGCTTGGGGAAGAGCTTCATTGTTTGGACCTTCAAGCAACATGCAAAATGGAGCCAAGCCATTCCCCTGAAATGCCTGTTTTCAACACAGATTCTTGTGTGGAAAGAAAGACTAGAGCAAAGAAGCTTCAGGGGCAACCTTCCAAGAACCTAATGGCAGAGAGAAGAAGAAGGAAGAGATTAAACGACAGACTCTCCATGCTAAGATCAATTGTCCCAAAGATAAGTAAGATGGACAGAACAGCTATTCTTGGAGACACTATTGATTATATGAAAGAGCTCTTGGAAAAGATTAACACTTTGAAGCAAGAAATAGAGGTGGATTCCAACACTGCTACCATTTTCAAGGATTTAAAGCCAAACGAAATCTTAGTAAGAAATTCTCCCAAGTTTGATGTGGAGAGGAGAAATGCCAATACAAGGGTGGAGATCTGCTGTGCTGGGAAGCCAGGCTTGCTGCTGTCTACGGTAAACACATTGGAAACACTAGGCCTGGAGATCCAACAATGTGTTATTAGCTGTTTCAATGATTTCACAGTGCAAGCTTCTTGTTCAGAGGAACTGCAGCAGAAGAAAATTCTGAGTTCAGAAGATATAAAACAAGCACTATTTAGAAGTGCAGGATATGGAGGAAGATGTTTGTGA 966 0.4017 MALRREPWDTNPCSQENQLFSNAWSFDCFDQNYQAFPSNSFSLQEVPQSYNFDYTFNEIYSSLFNEFSAPQIVDSSYSTLDASHISTPSFVPHEDYPLSLMEEEDPGLLGEELHCLDLQATCKMEPSHSPEMPVFNTDSCVERKTRAKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILGDTIDYMKELLEKINTLKQEIEVDSNTATIFKDLKPNEILVRNSPKFDVERRNANTRVEICCAGKPGLLLSTVNTLETLGLEIQQCVISCFNDFTVQASCSEELQQKKILSSEDIKQALFRSAGYGGRCL 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g02042 321 Gene3D - 141 216 IPR036638 GO:0046983
Vian7g02042 321 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 156 214 IPR036638 GO:0046983
Vian7g02042 321 SMART finulus 158 207 IPR011598 GO:0046983
Vian7g02042 321 Coils Coil 198 218 - -
Vian7g02042 321 CDD ACT_UUR-ACR-like 247 310 - -
Vian7g02042 321 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 17 316 - -
Vian7g02042 321 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 152 201 IPR011598 GO:0046983
Vian7g02042 321 Pfam Helix-loop-helix DNA-binding domain 158 201 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g02042 Vian-Chr7 33960244 33962098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g02042 44 321 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 49.667 3.07e-75 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian7g02042 HLH 1.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g02042 - - vra:106764382 615.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g02042 7 33960244 33962098 Vian7g02042 7 33960244 33962098 ECH