Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g02028 ATGCTGAGAAGCAGAACCATAATACCTCCTCTTCCACCATTACTCGCCCTCAGTGCAAGGCTTCCATCACCGTCACAGTCACCGTTACTGTCACCCTCCGTTACCCCCTCGGAAGCCACACTATCGTGTTCTGGAACCCCGAAACCCTCGTTCCACAGTTTTTCTCTCTTCTCCAATTCTCACACTCTTCAAACCATGACGCTCTCCAAGTGCTTCTCTCACATTGGGCCCACCGTCCCCATTCCGGACCCACCCGGATCCGAACCCGAACCCGATTCCCCTCTCGTGGTGGTTTCCTTCTACAAATTCGCGGATTTTCCCGATCATGCTCTCATGCGAAGCCCCTTGAAGCAACTCTTGTCTCACCCATCTGATGCTACTCAGCGTGTTTCAGGTGGAATTATTCTTGCGCCTGAAGGGATCAATGGCAGCATCTGTGGAACTCGGGAGTCAGTTGAGGCTGTTCTGGCATTTGCCCAAGGTGATGATCGATTGAAGGGACTAAGGCGAGTGGAATCACCTGTTGGTCCTGAGGAGGAGGCCATCCATCATGGCCATAGTGCTGCTTCTCCTCTTGCTGCTGGGGAAGATGCGCCCTTCCGATGGGATCATGTGAGGGTCAAGTTGAAGAAAGAGATTGTTACTCTTGGGATGCCTACTGTGTCACCTATTGAAAGAGTTGGAAAATATGTTGGCCCAGAAGATTGGAATGCTTTGATCAATGATCCAGATACAGTGGTTATTGATGTGCGGAATAACTATGAAACCAGAATCGGAAAGTTTAAAGGAGCAGTTGATCCATGTACTACATCATTTCGTGAATTCCCGTCTTGGGTAGAGGAGCGTTTCCAGCTTAGCGAAACAGACGATGGTAAGAATCCAAAAGTTGAGGTAAACAATTCAGTCCAACCTGCTGAAAAAGAAATGGAGAATCAAAAACAACATATGCCACGCGTTGCAATGTATTGCACTGGAGGTATTCGTTGTGAGAAAGCTACAAGTCTACTTCTCAGCAAAGGTTTCAAAGAGGTTTATCACCTGGAAGGTGGAATTTTAAAATATCTTGAAGAGGTTCCAGAAACAGAAAGCCTCTGGGAAGGGGAATGCTTTGTTTTCGACAAACGAGTCTCTGTGGAGCATGGCTTGGTGCCAGGAAATTTCAAACTCTGCTATGGCTGTAAACAGCCTGTGAGTGATGCTGACATGGAGGCCCCAGAATTTGAATATGGAGTTTCCTGTCCTCACTGTTTTGCACTGAAATCTGATGAAGAGAAGGAGAGAGCTCGAGCTCGACAAAGACAATTTGAGAGATGGGGAATCATAGGTGGTCCAGACAAGGGTCGCCGCCCAACTACTCAAGAACCGGAAAGTCTTAGCAGGAATCCAAACCAGCTTTCACGTTCTATTTAA 1410 0.4766 MLRSRTIIPPLPPLLALSARLPSPSQSPLLSPSVTPSEATLSCSGTPKPSFHSFSLFSNSHTLQTMTLSKCFSHIGPTVPIPDPPGSEPEPDSPLVVVSFYKFADFPDHALMRSPLKQLLSHPSDATQRVSGGIILAPEGINGSICGTRESVEAVLAFAQGDDRLKGLRRVESPVGPEEEAIHHGHSAASPLAAGEDAPFRWDHVRVKLKKEIVTLGMPTVSPIERVGKYVGPEDWNALINDPDTVVIDVRNNYETRIGKFKGAVDPCTTSFREFPSWVEERFQLSETDDGKNPKVEVNNSVQPAEKEMENQKQHMPRVAMYCTGGIRCEKATSLLLSKGFKEVYHLEGGILKYLEEVPETESLWEGECFVFDKRVSVEHGLVPGNFKLCYGCKQPVSDADMEAPEFEYGVSCPHCFALKSDEEKERARARQRQFERWGIIGGPDKGRRPTTQEPESLSRNPNQLSRSI 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g02028 469 Hamap tRNA uridine(34) hydroxylase [trhO]. 93 400 IPR020936 -
Vian7g02028 469 Gene3D - 215 396 IPR036873 -
Vian7g02028 469 Pfam Rhodanese-like domain 234 356 IPR001763 -
Vian7g02028 469 ProSiteProfiles Rhodanese domain profile. 241 363 IPR001763 -
Vian7g02028 469 PANTHER THIOSULFATE SULFURTRANSFERASE/RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 2 90 432 IPR020936 -
Vian7g02028 469 CDD RHOD_YceA 228 356 - -
Vian7g02028 469 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 210 389 IPR036873 -
Vian7g02028 469 SMART rhod_4 231 360 IPR001763 -
Vian7g02028 469 MobiDBLite consensus disorder prediction 454 469 - -
Vian7g02028 469 Pfam UPF0176 acylphosphatase like domain 96 213 IPR040503 -
Vian7g02028 469 Gene3D - 87 214 - -
Vian7g02028 469 MobiDBLite consensus disorder prediction 428 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g02028 Vian-Chr7 33079736 33084118 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g02028 95 469 Sulfurtransferasese or Rhodanese AT2G40760 73.475 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g02028 - - gmx:100784854 726.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g02028 7 33079736 33084118 Vian7g02028 7 33079736 33084118 ECH