Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g02027 ATGGGTAGGCGAAAAAGTAAACCACATCGAGCAGGTCATTGGCCTGTGTTACCCTATACTGATATTCATCTGGAGTTTGCAAGAAGAGTTACCGTTGATCATGAGGAAACTTATACAGTGTTGTTATCTGGTGTTTTTGACGGACCTGACGAAGGTGTTACTGGGCTTCTTCACTTGGCAAGTTTGAAGTTTGTTACACTGAGGCCAGTTCTTGGGGTTGGGCTTTCTGAGGAAATTTCCTCCCTCAGGGTAAGGGTTGAGGTACTAAAGAACGGCTTCAATGCATGTGAGTCGCTTCTTGATACTTCTAGACAACTATGGAAAAAGAGTATGGTAAATGTAATGTCTTGGTTGCGTCCAGAAATAATGACTTCAGAAGTTAGGTATGGGTTCTATAGCTGTATGAAAATGGATGGTGATCCACAGACAGAGATGGTAGATGACACTTGCAGGTCAAGGAAACATGCAAGGTTTGATCCTGCAGGTTTATATGAAGCCATTAAGCCTTCAAAAGCAGAGCCAATGATTGAAGATGACATACCAGAGTTACTTCCTAAACTGAGGCCATATCAAAGGCGTGCAGCTTTTTGGATGGTAGAAAGAGAGAAAGCAGTGGAAGAAAGTCAGGGTGAAAGAGAAAGAAATCAGTTTCATTCTCCACTATGCATACCTGTGGATTTTCTGGACACCAGTTCTCAAATGTTTTTCAATCCATTCAGATCAGCATCTGGAAGTGACATATTATTTGATTTAGAGCCACAAATTAACGCTGACCAAAAGGTCACTTTGAAGAGAGTTAAAAGAGATCGTGTGGAGTGCATATGTGGAGCTGTGAGCGAAAGTCTTAAATATGAAGGACTGTGGGTTCAGTGTGACATTTGTGATGCTTGGCAACATGCAGATTGTGTTGGTTATTCACCTAAAGGAAAATCTTTGAAATCAAAACAAGGATGTGAAAGCAAGACATATAAAACTACAGTGGCTGTGAGGGATGGAAAATATGTATGTCATATGTGCTCTGAACTAATTCAAGCTACTGAATCTCCTATTGCCTCTGGCGCCACTCTCATTGTCTGCCCTGCTCCTATTCTGCCCCAGTGGCATGATGAAATTATACGCCATACGCATCAAGGCTCCTTGAAAACTTGTGTCTATGAAGGTGTGCGAGAAACATCTTTTTCCAATGCGTCTGTGATGGATATCAGTGATCTTGCTAGTGCTGACATTGTATTAACTACATATGATGTGCTTAAAGAGGATCTGTCTCACGATTCTGATAGGCATGAAGGTGATCGGCACTTTCTGAGGTTTCAAAAAAGGTACCCTGTCATCCCAACTCTTCTTACGAGAATATACTGGTGGAGGGTTTGCTTGGATGAGGCACAAATGGTGGAAAGTAGTACTACAGCTTCCACTGAAATGGCTCTAAGACTCCATTCAAAGTATCGATGGTGTATTACTGGTACCCCAATTCAGCGAAAACTTGATGACTTATATGGACTTCTAAGGTTCCTTGTAGCCAGTCCTTTTGATACATACAGGTGGTGGACTGATGTTATTAGAGATCCTTATGAGAAGGGAGATGTGGGAGCTATGGAATTTACACACAAAGTTTTCAAACAAATCATGTGGCGTTCTTCTAAACAACATGTTGCTGATGAATTGTACCTTCCATCCCAAGAGGAGTGTCTCTCTTGGCTTACACTCTCACCAGTAGAGGAGCACTTTTACCAGAGGCAACATGAAACTTGTGTTAGAGATGCTCATGAAGTTATTGAAAGTTTGAGAAATGATATTCTTAATAGAAAAGGCCAAGATTCTATCTCTTTGCAAAGCTCCTCTGATCCTTTAATCACTCACACCGAGGCAGGGAAGCTACTGAATGCTTTGCTGAAGCTTCGTCAAGCTTGTTGTCATCCCCAGGTTGGAAGTTCTGGGTTGCGCTCCCTACAGCAGACACCAATGACTATGGAAGAAATACTAATGGTTCTTATAAGCAAGACCAAAATAGAAGGTGAGGAAGCTCTCAGGAAGTTAGTTATTGCTTTGAATGCACTTGCAGCTATTGCTGCAATACAGAATGATTTTTGTCAAGCTACATCACTGTACGGTGAAGCTCTTGCTTTGGCTGGAGAGCATGCTGAAGATTTCCGCCTGGATCCTTTGTTAAATATCCACATACATCATAATCTTGCTGAAATACTTCCACTTGCTTCAAACTTTTCTTTAACATTGGCATCCAAAGGAAAACAATTATCTGAAAGTTCTGAATTTAAGATGACCAAAAGGCATTTAATTTTAAAGGTTGACAGTTGTCATGTGAAGAGGCAAAGAATAAGTGGTTGTGATGACATAAATGCAACTGTGCCGTCTTCAGAACCATCAAATGTTAGCCTTTTGGAAAATGACACAAAGGAGGATCAGGAATTTGATAATTTATCAGCCAGTTCTGTCGAATCTCTGATAGCAGAATGTGAAGATTCAAAACAGAAATTCTTGTCTGTCTTCAGTTCAAAGCTATCTGTAGCCCAGCAGGAGTTTCAAAGTTCTTACGTTCAGGTCAGTAATGCTTATCGAGACAGTCGAACACATCAAAATTCATTTTGGTGGTTAGAAGCACTCCATCATGTTGAGCAGAGCAAAGAGTTCTCCTCTGAGTTGATTAGAAAGATTGAAGAAGCCATGTCAGGAACTTCAAGCAATTCAAAGTCATCAAGAATAACTGCTCGATTTTCGCCTTACCCTCATCCCTCAACAACCAAACAGACTCTGTACTTCTCAATTTTGTTATGTATGCTCTGTCACGTGTTGGATTCAGACTTTCCTTCACGAACTGGGTTCCGGGGTTTTCGAGGGGATCCGAGGTTAAAGTTCGTGTCTTTTCGCGAATATCTCTTTTGGTCAACTCCACGGTCTCCGGCACCCATCACTGCTGCTGTTGTCGCGTCGCCGCCGCCGCCGCCGTCGCTGCCGCCGCCACCGCCGTCGCCGGAGCTCCAGAATCGACCGGCGACCACACCATCGGAAGCGTCTCGGCCGGGCGACCACCGTCGCACGAAGATCGTCGCGATCGGAGCTCTCACGCGCCTTCACGCGCCGCCGCTGCCGCCGCTGCCGCTGCGCGTCGCCGGAGCTTCCGCCGCCGATCAGCACCGCCGTGATCGCCTCCTCGCCCTCTTTCTGGATCTGTGGTCGTTGCGTCAATCGGAGCACTTTGAATTTTTAGGGTTCCTCCCTCTCCATGGCGTCTTCCTCGTCTACAAACACCTCTATTGTTTCCGAAGCATAAGCGCTCTAAAGTATCAAATTCAGACAGGTTTGGATCAGTTAGAGGCCTCTAGAAAAACACTACTAGATCGACTGTTAGAAATTGATCAGACAATGGAAAAACCAAAAGAGGAAGATATTGAACGTGTGGGTAAATGTCGAAATTGTCAGCCTAATTCTGACGGTCCCCCATGTGTTTTGTGCGAGCTAGATGAATTGTTTCAGGATTATGAAGCAAGACTCTTCGTTCTTAAGAATGAACGTGGAGGGATAATTTCATCTGCTGAGGAGGCAGTAGATTTTCAGAAGAAAAACTTTGCACTAAATCATTTCCTCTCAAAGCTATCACAATCTAGTAACAGTTCTACAACATCTGATATTGGTCATGAAGAATCAAAGAAAAGGAATGTTGGACAAAGAGTAGTGGTTTCAAGATCAGCATCTGAGTTGGAGCTAATTCTTGGAGTTATAAAGAACTACTGCAAGGCTCGATTAGGAAAGGACTCTGTCTCAGCTGCCACCAAGGATTTACATGTTTTTGAGGGAATGCGAAAGGAGTTTGGCCATGCAAGGTCTTTGGCATTAGCTCAAGCTCAGTATCTGCGTGCACATGATGAAATAAAGATGGCTGTTTCCCGTCTGCACCTAAGGACAAGTGAAGATGATAAATCTCTCGATGCTTTAGGTGAAAATGAATTAGTTGCTGCTAGCTCCAACTTTTCCCACGAAAAGTTTATGTCATTGACCATGTTGTCCCAGACGAAAGGAAAACTCCGCTACCTAAAGGGTTTAGTTCAATCCAAGCAAAAAAAGCAATTTGAAAGTCCAAACGGCTCTTCAATCTCAGTAGAAAGAACTGCAATGTCAAACTATACTGAAGAGAAGGCTGTACTTATAGCTAAAACTGATGATGAAACATGCCCAGTCTGCCAAGAAAAGCTAGGCAATCAGAAGATGGTTTTTCAATGTGGGCATGTCACATGCTGTAAATGTTTATTTGCTATGACTGAGAAAAGACTTCAAAATAGCAAGCTTCATAATTGGGTGATGTGCCCTACATGTCGGCAGCATACTGATTTTGGAAACATTGCCTATGCTGTTGACTCACAGAATGAATCTTCCAATCTTTCAGTGCTGCATACAATTAACAGCAGTGAAAAATGTGAAGCATCCATTAGTGTCAAAGGATCATATGGGACTAAGATTGAAGCAGTCACAAGAAGAATCTTGTGGGTAAAGGCTAATGATCATAAAGCAAAAGTTCTTGTATTTTCAAGTTGGAATGATGTACTTGATGTATTGGAGCATTCCTTTACTGCCAATAATATTACCTTCATCCGGATGAAGGGGGGCAGTAACTCCTATAACCCTGCTATTCCATGTCAAACCCTTGTCTCTTCAAATAAAGTGACACCGTCATCAGTTACCATGGCCAGAGATTTGAGCTTCAAGGTCAGCACTTCTTCTCAGAGCCATGCTTCTTTTGTGGTGCAACGGAAAGAGAATAATAATGGGGATAATGGGTTTGTAGTAGGGTGTGCAAAATGGGGTTTGCAGAGAGAAGCGGAAGATGAGATGAAACCGCATGAAGATGATGACAAGGGTAGGAATGGAATGACAAGGTTTAGACATAACTGTGGAGAAGGAGAGGGGATTGCGGAGCTGTTGGAGTGTTTAGAAAGGGAAGCTATAATGGGTGAAGATGTGGGAAAAGATCCTACTGATTACAACAGAAGGGCTAAGATATTTGATAGAAGCTCTCAAGTATTCCAAGCTCTCAAAAAACATAACAGTGATGGTTTCCCACAAGAGTCTTCTTAA 5088 0.4277 MGRRKSKPHRAGHWPVLPYTDIHLEFARRVTVDHEETYTVLLSGVFDGPDEGVTGLLHLASLKFVTLRPVLGVGLSEEISSLRVRVEVLKNGFNACESLLDTSRQLWKKSMVNVMSWLRPEIMTSEVRYGFYSCMKMDGDPQTEMVDDTCRSRKHARFDPAGLYEAIKPSKAEPMIEDDIPELLPKLRPYQRRAAFWMVEREKAVEESQGERERNQFHSPLCIPVDFLDTSSQMFFNPFRSASGSDILFDLEPQINADQKVTLKRVKRDRVECICGAVSESLKYEGLWVQCDICDAWQHADCVGYSPKGKSLKSKQGCESKTYKTTVAVRDGKYVCHMCSELIQATESPIASGATLIVCPAPILPQWHDEIIRHTHQGSLKTCVYEGVRETSFSNASVMDISDLASADIVLTTYDVLKEDLSHDSDRHEGDRHFLRFQKRYPVIPTLLTRIYWWRVCLDEAQMVESSTTASTEMALRLHSKYRWCITGTPIQRKLDDLYGLLRFLVASPFDTYRWWTDVIRDPYEKGDVGAMEFTHKVFKQIMWRSSKQHVADELYLPSQEECLSWLTLSPVEEHFYQRQHETCVRDAHEVIESLRNDILNRKGQDSISLQSSSDPLITHTEAGKLLNALLKLRQACCHPQVGSSGLRSLQQTPMTMEEILMVLISKTKIEGEEALRKLVIALNALAAIAAIQNDFCQATSLYGEALALAGEHAEDFRLDPLLNIHIHHNLAEILPLASNFSLTLASKGKQLSESSEFKMTKRHLILKVDSCHVKRQRISGCDDINATVPSSEPSNVSLLENDTKEDQEFDNLSASSVESLIAECEDSKQKFLSVFSSKLSVAQQEFQSSYVQVSNAYRDSRTHQNSFWWLEALHHVEQSKEFSSELIRKIEEAMSGTSSNSKSSRITARFSPYPHPSTTKQTLYFSILLCMLCHVLDSDFPSRTGFRGFRGDPRLKFVSFREYLFWSTPRSPAPITAAVVASPPPPPSLPPPPPSPELQNRPATTPSEASRPGDHRRTKIVAIGALTRLHAPPLPPLPLRVAGASAADQHRRDRLLALFLDLWSLRQSEHFEFLGFLPLHGVFLVYKHLYCFRSISALKYQIQTGLDQLEASRKTLLDRLLEIDQTMEKPKEEDIERVGKCRNCQPNSDGPPCVLCELDELFQDYEARLFVLKNERGGIISSAEEAVDFQKKNFALNHFLSKLSQSSNSSTTSDIGHEESKKRNVGQRVVVSRSASELELILGVIKNYCKARLGKDSVSAATKDLHVFEGMRKEFGHARSLALAQAQYLRAHDEIKMAVSRLHLRTSEDDKSLDALGENELVAASSNFSHEKFMSLTMLSQTKGKLRYLKGLVQSKQKKQFESPNGSSISVERTAMSNYTEEKAVLIAKTDDETCPVCQEKLGNQKMVFQCGHVTCCKCLFAMTEKRLQNSKLHNWVMCPTCRQHTDFGNIAYAVDSQNESSNLSVLHTINSSEKCEASISVKGSYGTKIEAVTRRILWVKANDHKAKVLVFSSWNDVLDVLEHSFTANNITFIRMKGGSNSYNPAIPCQTLVSSNKVTPSSVTMARDLSFKVSTSSQSHASFVVQRKENNNGDNGFVVGCAKWGLQREAEDEMKPHEDDDKGRNGMTRFRHNCGEGEGIAELLECLEREAIMGEDVGKDPTDYNRRAKIFDRSSQVFQALKKHNSDGFPQESS 1695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g02027 1695 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1382 1467 IPR013083 -
Vian7g02027 1695 MobiDBLite consensus disorder prediction 979 1001 - -
Vian7g02027 1695 Coils Coil 1107 1127 - -
Vian7g02027 1695 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 558 IPR027417 -
Vian7g02027 1695 ProSitePatterns Zinc finger PHD-type signature. 273 339 IPR019786 -
Vian7g02027 1695 SMART ring_2 1396 1443 IPR001841 -
Vian7g02027 1695 CDD PHD_TCF19_like 274 318 - -
Vian7g02027 1695 ProSiteProfiles Zinc finger RING-type profile. 1396 1444 IPR001841 -
Vian7g02027 1695 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 265 336 IPR013083 -
Vian7g02027 1695 SUPERFAMILY RING/U-box 1389 1448 - -
Vian7g02027 1695 Gene3D - 1468 1550 IPR027417 -
Vian7g02027 1695 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 253 912 - -
Vian7g02027 1695 SUPERFAMILY FYVE/PHD zinc finger 269 341 IPR011011 -
Vian7g02027 1695 CDD DEXQc_SHPRH 339 546 - -
Vian7g02027 1695 SMART ultradead3 183 516 IPR014001 -
Vian7g02027 1695 Pfam SNF2-related domain 289 642 IPR000330 GO:0005524|GO:0140658
Vian7g02027 1695 Gene3D - 337 566 IPR038718 -
Vian7g02027 1695 MobiDBLite consensus disorder prediction 978 1016 - -
Vian7g02027 1695 SMART PHD_3 272 340 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g02027 Vian-Chr7 33038394 33079075 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g02027 347 640 RAD5 or RAD16-like Gene Family AT5G22750 32.107 6.76e-36 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vian7g02027 SNF2_N 1e-69 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g02027 7 33038394 33079075 Vian4g01229 4 24424346 24424810 PCT