Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g02020 ATGAAGTTCCAATTCCGTGCTGTTTCATTTGTTCTGCTAAGCTTCATAGTGTCTCTCTTTGGCCTGATTGTAGCTGACTTGAACTCCGACAGACAAGCTCTGCTTGAGTTCTTCTCAAATGTTCCACACGCCCCAAGATTAAATTGGAGTGAGTCCACTCCAATTTGTACTTCTTGGGCTGGTGTGACTTGCAACCAAAATGAAACTAGTGTCATTAGCATCCGTCTTCCAGGGGCAGGTTTCCAGGGCTCCATTCCAGAGAATAGCCTGGGTAAACTAGATTCTCTTAAAATTCTGAGCCTTCATTCCAATGGCCTCAGAGGAAACCTTCCTTCTGACATTCTCTCTATTCCTTCACTCCAATATGTAAACCTGCAGCAAAATAACTTCTCAGGTCTAATCCCTTCTTCCCTCTCCCCTAAACTCATAGCATTAGACATTTCCTCTAATAATTTCTCGGGAAGTATCCCACCTATCTTTCAGAATCTCAGTAGACTAACCTGGTTGTATCTCCAAAACAATTCCCTCTCTGGGGCTATTCCTGACTTCAACTTTACAAGTCTCAAGTATTTGAATTTGAGCTATAACAACTTGAATGGCTCAATTCCAAAGTCCATCAACAAGTATCCGTACACTTCTTTTGCTGGGAACTCTCACTTGTGTGGACCACCTCTCAATAACTGCTCTGCAGTCTCCACTCCATCTTCATTTTCTTCCTCCATTTCTCCTTCACCTGTTCATCAACCACTCTCTCCAGAAGCAGCTCCCCAAAATAGAAGTGCTACCACTTCAAAGAGTTACTTTGGCCTAGCTTCTATACTTGCTCTGACAATTGGGGGCTGTGCTTTCCTCTCTCTCCTAGTTTTGGTGATGTTTGTATGCTGTTTAAAGAAGAACAAAAGTCAAAGCAGTGGCATACTTACAGGAAAGGCACCGTGTTCTGGAAAGATTGAGGTTTCAAAGAGTTTCGGGAGTGGGGTGCAAGAGGTTGAAAAAAACAGGCTGTTTTTCTTTGAAGGTTGCTCTTACAGCTTTGACCTTGAAGATTTGTTAAAGGCTTCAGCTGAAGTTCTTGGAAAGGGGAGCTATGGAACAACATATAGGGCTGTTTTGGAGGATGGAACAGCAGTGGTAGTTAAAAGGTTGAGGGAAGTTCTAGTTGGAAAGAAGGAGTTTGAGCAGCAGATGGAGGTTGTAGGAAGAATTGGTCGGCACCCTAATGTTTTGCCCCTTCGAGCCTTTTACTTCTCCAAAGATGAGAAACTTCTAGTATATGACTACATGCCTGGAGGCAGCTTGTTTTCCTTGTTGCATGGGAACAGAGGAATGGGAAGAGCTCCATTAGACTGGGATTCAAGAATGAAGATTGTACTTGGAGTTGCAAAGGGGATTGCTTCCATTCACACTGAGCACATGGATTTAAAACTTACTCATGGCAACATCAAGTCCTCCAATGTGCTCATAACCCAAGAACATGATGGCTGCATCACTGATGTAGGACTCACTCCTATGATGACCACTCAATCAACCATGTCAAAAGCCAATGGCTACCGTGCTCCCGAAATAACCGAGTACAGGAGAATCACTCAGAAGTCTGATGTTTACAGCTTTGGAGTGCTCCTTCTTGAAATGCTCACTGGAAAGGCTCCAATAGGATATCCTGGATATGAGGACATGGTTGATCTTCCAAGATGGGTGAGGTCTGTGGTTAGAGAGGAATGGACTGCTGAAGTTTTTGATGAGGAGCTGCTTAGAGGGCAGTATTTTGAAGAGGAAATGGTGCAGATGCTTCAGATTGCACTGGCATGTGTGGCTAAGGTAGCAGATAATAGGCCAACAATGGATGAAACTGTTAGGAACATAGAGGAAATTAGGCTTCCTGAATTGAATAACCATAACACATCATCTGAGTCTGACTCTAATCTACAAACTCCATGA 1938 0.4345 MKFQFRAVSFVLLSFIVSLFGLIVADLNSDRQALLEFFSNVPHAPRLNWSESTPICTSWAGVTCNQNETSVISIRLPGAGFQGSIPENSLGKLDSLKILSLHSNGLRGNLPSDILSIPSLQYVNLQQNNFSGLIPSSLSPKLIALDISSNNFSGSIPPIFQNLSRLTWLYLQNNSLSGAIPDFNFTSLKYLNLSYNNLNGSIPKSINKYPYTSFAGNSHLCGPPLNNCSAVSTPSSFSSSISPSPVHQPLSPEAAPQNRSATTSKSYFGLASILALTIGGCAFLSLLVLVMFVCCLKKNKSQSSGILTGKAPCSGKIEVSKSFGSGVQEVEKNRLFFFEGCSYSFDLEDLLKASAEVLGKGSYGTTYRAVLEDGTAVVVKRLREVLVGKKEFEQQMEVVGRIGRHPNVLPLRAFYFSKDEKLLVYDYMPGGSLFSLLHGNRGMGRAPLDWDSRMKIVLGVAKGIASIHTEHMDLKLTHGNIKSSNVLITQEHDGCITDVGLTPMMTTQSTMSKANGYRAPEITEYRRITQKSDVYSFGVLLLEMLTGKAPIGYPGYEDMVDLPRWVRSVVREEWTAEVFDEELLRGQYFEEEMVQMLQIALACVAKVADNRPTMDETVRNIEEIRLPELNNHNTSSESDSNLQTP 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g02020 645 FunFam Leucine-rich repeat receptor-like kinase 30 141 - -
Vian7g02020 645 Gene3D Ribonuclease Inhibitor 28 140 IPR032675 -
Vian7g02020 645 FunFam pollen receptor-like kinase 1 320 427 - -
Vian7g02020 645 Pfam Leucine rich repeat 118 176 IPR001611 GO:0005515
Vian7g02020 645 Gene3D Transferase(Phosphotransferase) domain 1 428 643 - -
Vian7g02020 645 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 428 635 - -
Vian7g02020 645 FunFam Leucine-rich repeat receptor-like protein kinase 142 228 - -
Vian7g02020 645 SUPERFAMILY L domain-like 40 225 - -
Vian7g02020 645 SUPERFAMILY Protein kinase-like (PK-like) 356 620 IPR011009 -
Vian7g02020 645 Pfam Leucine Rich Repeat 187 206 IPR001611 GO:0005515
Vian7g02020 645 Gene3D Ribonuclease Inhibitor 141 229 IPR032675 -
Vian7g02020 645 Gene3D Phosphorylase Kinase; domain 1 318 427 - -
Vian7g02020 645 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
Vian7g02020 645 Pfam Protein kinase domain 356 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g02020 645 PANTHER OS05G0588300 PROTEIN 10 632 - -
Vian7g02020 645 ProSiteProfiles Protein kinase domain profile. 352 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g02020 645 MobiDBLite consensus disorder prediction 239 258 - -
Vian7g02020 645 ProSitePatterns Protein kinases ATP-binding region signature. 358 389 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g02020 Vian-Chr7 32874039 32876442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g02020 5 643 Receptor kinase-like Gene Family AT5G58300 55.814 0.0 696
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vian7g02020 Pkinase 8.9e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g02020 - - vum:124839146 1245.34