Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g02017 ATGGCCTCCGAATGTGCTGTCTGCCTCGACGACATCGCCACCGACCAACCTGCTCGACTCGTTCCCGGTTGCAACCACGCCTTCCATGTGGAATGCGCTGACACCTGGCTCTCCAAGCACCCTCTCTGCCCTCTCTGCAGAGCCAAACTCGACCCCACGCTAATCTCTTCCTCGGAAACTCTTCGCCACTGTACAGTTTCTCATCTCTCCTATGCAGCGCCAAAAGAGAGTGTGATTCGAAGGAACAAAAGATTCGAATGA 261 0.5479 MASECAVCLDDIATDQPARLVPGCNHAFHVECADTWLSKHPLCPLCRAKLDPTLISSSETLRHCTVSHLSYAAPKESVIRRNKRFE 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g02017 86 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 55 IPR013083 -
Vian7g02017 86 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 3 63 - -
Vian7g02017 86 SMART ring_2 5 46 IPR001841 -
Vian7g02017 86 ProSiteProfiles Zinc finger RING-type profile. 5 47 IPR001841 -
Vian7g02017 86 SUPERFAMILY RING/U-box 4 53 - -
Vian7g02017 86 Pfam Ring finger domain 4 47 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g02017 Vian-Chr7 32803460 32803720 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g02017 2 64 C3H Transcription Factor Family AT5G42200 58.730 1.82e-22 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g02017 K19037 - gmx:100817919 115.546