Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01989 ATGAAAGTAATAAACTTTTCTGGTAGCATAGCAAAACCCAGTTTTTTGATTGGCCAATCGGAAATGCCTATTCTAACATTTGGTCATTGTAAGCTGAGTGCTACCCTTGCTCTACGGTTATCACGAGATTGCATTAGAAGAATGGAGTTGATTACGAAACTTCAGTATTCTGTTGCTGATAGGACATTTAGTTCTGGTTCGGTGTATTCGCCGACGCCTGAATCGGAGTCCGGTAGAATGAATCGTCGCCGGGGAGGTTCCTCATCGATATATAGCCGTCCTAGTTTATCAGAAATGAAGAAAGAGAAGGCTGCACTAAGGGAAAAAGTTTATGAGTTCTTGAAGACAATTGGCATTGTTCCTGATGAGCTTGATGGTCTTGAACTTCCTGTGACTGTTGATGTTATGAGGGAGCGCATAGATTTTCTTCATAGTTTGGGGCTTACAATTGAAGATATCAACAATTATCCACTTGTTCTTGGCTGCAGCGTCAAGAAGAACATGATTCCTGTGCTTGACTATCTTGGTAAATTGGGAGTGAGGAAATCCTCCATTACGTTGTTCTTGCAGAGATACCCACAAGTTCTCCATGCTAGTGTTGTTGTGGATCTTATGCCAGTGGTTAATTATCTTAAGGGGATGGATATCAAGACTGAGGATATTCCTCGTGTTCTTGAGAGGTACCCTGAAGTGCTTGGCTTCAAACTTGAGGGAACCATGAGCACATCAGTTGCTTTTTTGATTGGAATTGGTGTAGGAAGAAGACAAATTGGAGGTGTCTTAACTAAATATCCAGAGATTTTGGGTATGCGAGTTGGTAGAATCATTAAGCCTTTTGTGGAATATCTGGAAAGTTTGGGAATTCGAAGGTTAGCCATTGCTAGATTGATAGAGCAACGACCTTATATTCTTGGATTTGGGCTGGATGAGAAGGTGAAACCAAATGTTAAATCCCTTGAAGATTTTAGTGTTAGACGAACATCACTTCCTTCTATAATTGCTCAGTATCCTGACATCATTGGAACTGACTTAAATTCAAAGCTTTTCAATCAGAGAATTATACTCAATTCGGTGCTTGAATTGGATACAGAGGACTTTGCCCGAGTTGTTGAGAAGATGCCACAGGTAGTTAGCCTCATTAGGGGACCTATGCTGAAGCATGTTGATTTTCTTAAGGATTGTGGCTTTTCGTTGCCTCAGATAAGGAAGATGATTGTTGCATGTCCTCAATTACTCGCTTTAAACATTGACATTATGAAACTTAGCTTTGATTACTTCCAAATGAAGATGAAAAGACCTTTGGAAGATTTGGTTACATTCCCTGCATTCTTCACTTATGCTTTGGAGTCAAGTATAAAGCCTAGGCATGTGAGGGTTGCCAAGAAAGGGTTAAAGTGTTCTTTGTCATGGATGCTTAATTGTTCTGATGAGAAGTTTGAGCAACGAATGGACTATGACACTATTGACATGGAAGAAATGGAAATGGAAATGGAATCATCATTTGACATGGATTCACTAACACAACCAAGGAGTGATGATGAGTCAGATTTTGACTATGAAGACAGTGACGAAGATGATGCGTAG 1584 0.4009 MKVINFSGSIAKPSFLIGQSEMPILTFGHCKLSATLALRLSRDCIRRMELITKLQYSVADRTFSSGSVYSPTPESESGRMNRRRGGSSSIYSRPSLSEMKKEKAALREKVYEFLKTIGIVPDELDGLELPVTVDVMRERIDFLHSLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVRKSSITLFLQRYPQVLHASVVVDLMPVVNYLKGMDIKTEDIPRVLERYPEVLGFKLEGTMSTSVAFLIGIGVGRRQIGGVLTKYPEILGMRVGRIIKPFVEYLESLGIRRLAIARLIEQRPYILGFGLDEKVKPNVKSLEDFSVRRTSLPSIIAQYPDIIGTDLNSKLFNQRIILNSVLELDTEDFARVVEKMPQVVSLIRGPMLKHVDFLKDCGFSLPQIRKMIVACPQLLALNIDIMKLSFDYFQMKMKRPLEDLVTFPAFFTYALESSIKPRHVRVAKKGLKCSLSWMLNCSDEKFEQRMDYDTIDMEEMEMEMESSFDMDSLTQPRSDDESDFDYEDSDEDDA 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01989 527 Pfam mTERF 172 480 IPR003690 GO:0003690|GO:0006355
Vian7g01989 527 MobiDBLite consensus disorder prediction 65 95 - -
Vian7g01989 527 Gene3D Transcription termination factor 3, mitochondrial 151 275 IPR038538 -
Vian7g01989 527 Gene3D Transcription termination factor 3, mitochondrial 276 489 IPR038538 -
Vian7g01989 527 MobiDBLite consensus disorder prediction 497 527 - -
Vian7g01989 527 PANTHER CGI-12 PROTEIN-RELATED 171 483 IPR003690 GO:0003690|GO:0006355
Vian7g01989 527 FunFam Transcription termination factor MTERF4, chloroplastic 274 488 - -
Vian7g01989 527 SMART mt_12 258 289 IPR003690 GO:0003690|GO:0006355
Vian7g01989 527 SMART mt_12 434 465 IPR003690 GO:0003690|GO:0006355
Vian7g01989 527 SMART mt_12 222 253 IPR003690 GO:0003690|GO:0006355
Vian7g01989 527 SMART mt_12 186 217 IPR003690 GO:0003690|GO:0006355
Vian7g01989 527 SMART mt_12 367 397 IPR003690 GO:0003690|GO:0006355
Vian7g01989 527 SMART mt_12 294 325 IPR003690 GO:0003690|GO:0006355
Vian7g01989 527 SMART mt_12 402 433 IPR003690 GO:0003690|GO:0006355
Vian7g01989 527 SMART mt_12 150 181 IPR003690 GO:0003690|GO:0006355
Vian7g01989 527 SMART mt_12 87 120 IPR003690 GO:0003690|GO:0006355
Vian7g01989 527 FunFam Transcription termination factor mterf4, chloroplastic 136 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01989 Vian-Chr7 32328145 32329728 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vian7g01989 mTERF 2.1e-104 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01989 K15032 - gmx:100785223 816.609