Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01975 ATGGGTTATTTATGTGATTTTTGTGGAGACCAGAGGTCATTGGTGTACTGTCGCAGTGATGCTGCATGCTTATGTTTGTCGTGTGATCGAAATGTTCATTCTGCTAATGCCCTATCTAGGCGTCATTCGAGAAGCCTTCTATGTGAGAGATGTAATTCACAACCTGCTTTCGTGAGATGTGTTGAAGACAAAATTTCGCTTTGTCAGAACTGCGATTGGTTGGCTCATGGTAGCTCACCTACTTCTTCGACACACAAGAGGCAAACAATCAATTGCTACTCTGGCTGCCCTTCAGCTGCAGAGTTTTCTTCAATATGGTCCTTTTTCTTAGATATCCCTTCTATGGGTGAAGCATGTGAGCAGGAACTGGGTTTGATGAGCATTAATGAGAATGGCAACAAGAGTGATTTGGTTCCTCCAGAAGGGACAAATGTGTCTGGTTCATCTCAAGTGACAGATCTACCCACCAAGGGTAAATTTTGGGCTGGAACATCTTCAATACCCGTGTCAGACTCAGAACCTCGTATCCTGGACCAGCTACCTGAACCTGGGAATGAATGTATGCCCAAGTTGAATTGTCCTGGGAAAAAAATTTCCGGGATATGTGAAGATGATAATCTATATGATGATTTCATCATGGATGAAGTGGATCTAGAACTTGAGAACTACCAGGAACTTTTTGGGATGGCTCTCAGTCATTCGGAAGAGCTTTTTGAAAATGGTGGAATTGAAAGCTTATTTGAGACAAAAGACATGTCTGCTAGTGTTGGTGAATCCCACTGTCACGGTGCTGTTGCTGCTGAGGGATCATCTACTGGGCTGGTCAATGCTATCCAACCAGCATGCAGCAATGCAGCATCTGTAGATTCAATGTTGAGTACAAAAACTGAACCAATTGTTTGTTTTACGGGAAGGCAATCTCAATCAAACATTTCTTTTTCTGGTGTTACCAAAGATAGTGCTGGTGACTATCAAGAATGTGATGCTTCTTCAATGCTTCTCATGGGAGAGCCTCCCTGGTGTCCTCCTTGCCCTGAGAGTTCCCTGCATTCTGCCAACCGTAGCAATGCTGTAATGCGCTATAAGGAAAAGAAGAAGACCCGGAAGTTCGAGAAGAAAGTAAGGTATGCCTCTCGCAAGGCTAGGGCCGATGTCAGAAGGCGTGTGAAGGGCCGATTTGTTAAAGCCGGTGATGTCTATGACTATGACCCTTTGAGCCAAACCAGAAGCTACTGA 1236 0.4434 MGYLCDFCGDQRSLVYCRSDAACLCLSCDRNVHSANALSRRHSRSLLCERCNSQPAFVRCVEDKISLCQNCDWLAHGSSPTSSTHKRQTINCYSGCPSAAEFSSIWSFFLDIPSMGEACEQELGLMSINENGNKSDLVPPEGTNVSGSSQVTDLPTKGKFWAGTSSIPVSDSEPRILDQLPEPGNECMPKLNCPGKKISGICEDDNLYDDFIMDEVDLELENYQELFGMALSHSEELFENGGIESLFETKDMSASVGESHCHGAVAAEGSSTGLVNAIQPACSNAASVDSMLSTKTEPIVCFTGRQSQSNISFSGVTKDSAGDYQECDASSMLLMGEPPWCPPCPESSLHSANRSNAVMRYKEKKKTRKFEKKVRYASRKARADVRRRVKGRFVKAGDVYDYDPLSQTRSY 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01975 411 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 398 - -
Vian7g01975 411 Pfam CCT motif 354 396 IPR010402 GO:0005515
Vian7g01975 411 CDD Bbox1_BBX-like 47 90 - -
Vian7g01975 411 ProSiteProfiles CCT domain profile. 354 396 IPR010402 GO:0005515
Vian7g01975 411 CDD Bbox1_BBX-like 4 47 - -
Vian7g01975 411 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vian7g01975 411 SMART bboxneu5 48 90 IPR000315 GO:0008270
Vian7g01975 411 SMART bboxneu5 4 47 IPR000315 GO:0008270
Vian7g01975 411 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01975 Vian-Chr7 31877300 31890028 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01975 1 411 C2C2-CO-like Transcription Factor Family AT3G07650 55.294 5.08e-148 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vian7g01975 CCT 2.4e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01975 - - gmx:100783016 729.169