Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01973 ATGAAGAAAACAGCATCTCCCAAATTTCAGCAATCTAGCCAAAGGAAACAGAATCATAATCACCAAGTTCTTGCTACAGTCAATGATGAAGAGAGGCACAATCCTAAGACCGGTTCTGCACTCAAATCTTTCAAGAATGCTGTGAAGAAATGTGCACAGATTTTTTCATTGTTTCTCCTTGGCAAAAGAAAATCAGCCTCATATGTTGTTGGAAATGATGACAGAAAAAATACATCTAAAGTCAGAGGGGTGGCATCATCATCAACTGATTTATCTTCGGAGAGTAACACCAAGAATTCATCAAAATGGAAGTTTTCTTATTCCTACGCCTCATCTAGCACTGCAAGTGGACAACTTGGAATTGGCAACTTCTCCTTTGAAGAAATTTACAAGTCAACTGCAAAATTCTCACCAGATAATGAAATTGGACAAGGTGGTTTCGGAACTGTCTACAGGGGAAAACTAAATGATGGATCTATGGTTGCCGTAAAGCGTGCCAAGAAGGAAGTAATACACAGTCACTTACACGAGTTCAAGAATGAAATATACACCTTGTCTCAAATTGAGCATCGGAATCTGGTGAGGTTGTATGGATATTTGGAACATGGAAATGAGAAGATCATTGTTGTTGAATATGTTGGTAATGGTAACCTTCGAGAACACCTTGATGGGATTCGGGGAGAAGGATTAGAAATGGGGGAGCGTCTAGACATAGCAATTGATGTAGCTCATGCAATAACTTACCTTCATATGGTATTTGCAATGTCTGCTAAAGCAATGAAGATGCTGAAACAAGGGGATGCTGTATTTACCATGGACCCTAGGCTGAGAAGAAATCCAGCCTCCATCAAGGCAGTAAAACAGGTTCTCAAGCTAGCTTTCCAATGCGTTGCTCCTTTGAAACAATCACGGCCACCTATGAAGAACTGTGCAGAGGTTCTGTGGGAAATCCGCAAAAGTTTTAGAGATGAAACCAATTCTGATCATCCTTCTCTTCCTTCACACCATTCTGCAGATTTTCCTCAAAGGGAAAAGAATAAGCATACAGTGTTTGGCATTGAAGATGATGACAGCTATAAATTTGTCTCTGTACCTAATCATATTCATTCATAA 1113 0.3971 MKKTASPKFQQSSQRKQNHNHQVLATVNDEERHNPKTGSALKSFKNAVKKCAQIFSLFLLGKRKSASYVVGNDDRKNTSKVRGVASSSTDLSSESNTKNSSKWKFSYSYASSSTASGQLGIGNFSFEEIYKSTAKFSPDNEIGQGGFGTVYRGKLNDGSMVAVKRAKKEVIHSHLHEFKNEIYTLSQIEHRNLVRLYGYLEHGNEKIIVVEYVGNGNLREHLDGIRGEGLEMGERLDIAIDVAHAITYLHMVFAMSAKAMKMLKQGDAVFTMDPRLRRNPASIKAVKQVLKLAFQCVAPLKQSRPPMKNCAEVLWEIRKSFRDETNSDHPSLPSHHSADFPQREKNKHTVFGIEDDDSYKFVSVPNHIHS 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01973 370 MobiDBLite consensus disorder prediction 325 345 - -
Vian7g01973 370 MobiDBLite consensus disorder prediction 81 99 - -
Vian7g01973 370 Gene3D Transferase(Phosphotransferase) domain 1 123 329 - -
Vian7g01973 370 MobiDBLite consensus disorder prediction 1 24 - -
Vian7g01973 370 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 273 333 IPR044652 GO:0004672
Vian7g01973 370 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 1 100 212 - -
Vian7g01973 370 SUPERFAMILY Protein kinase-like (PK-like) 117 250 IPR011009 -
Vian7g01973 370 ProSitePatterns Protein kinases ATP-binding region signature. 142 168 IPR017441 GO:0005524
Vian7g01973 370 MobiDBLite consensus disorder prediction 73 99 - -
Vian7g01973 370 ProSiteProfiles Protein kinase domain profile. 136 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g01973 370 Pfam Protein tyrosine and serine/threonine kinase 139 250 IPR001245 GO:0004672|GO:0006468
Vian7g01973 370 MobiDBLite consensus disorder prediction 1 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01973 Vian-Chr7 31842271 31845836 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01973 108 250 Receptor kinase-like Gene Family AT1G79620 45.578 2.15e-28 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Vian7g01973 PK_Tyr_Ser-Thr 1.8e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01973 - - gmx:100811511 392.889