Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01972 ATGGGGTACCTTGCACCTGAACTCACACGAACGGGGAAACCCACCACCAGTTCTGATGTTTATGCTTTCGGAGCATTGTTGTTGGAGGTGGTGTGCGGGAGGAGGCCCATTGAGGTGAAGGCATTGCTGGAGGAGCTGGTGCTGGTGGATTGGGTCTGGGAGCGGTGGCGCATGGGGGCGCCGCTGGCAGTGGTGGACCCCAGGTTGGGTGGGGCGTTTGATGAGGTGGAAGTTTTAGTAGTGATTAAAGTGGGGTTGTACTGTTCCGCGGAGGCACCAGAGAAGAGGCCCAGCATGAGGCAGGTGGTGAGGTATTTGGAGAGGGAGGTGGCGCGGCCTCCGCTGGTGCTAGATGAAATGTTCGCCACACCAGAATTTTTGCAAGAAGAATGA 393 0.57 MGYLAPELTRTGKPTTSSDVYAFGALLLEVVCGRRPIEVKALLEELVLVDWVWERWRMGAPLAVVDPRLGGAFDEVEVLVVIKVGLYCSAEAPEKRPSMRQVVRYLEREVARPPLVLDEMFATPEFLQEE 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01972 130 Gene3D Transferase(Phosphotransferase) domain 1 1 119 - -
Vian7g01972 130 Pfam Protein tyrosine and serine/threonine kinase 3 105 IPR001245 GO:0004672|GO:0006468
Vian7g01972 130 ProSiteProfiles Protein kinase domain profile. 1 115 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g01972 130 PANTHER - 1 110 - -
Vian7g01972 130 SUPERFAMILY Protein kinase-like (PK-like) 2 117 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01972 Vian-Chr7 31833777 31835137 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01972 1 128 Receptor kinase-like Gene Family AT3G55550 62.500 8.76e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vian7g01972 PK_Tyr_Ser-Thr 5e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01972 - - vum:124822188 205.682