Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01965 ATGAAGTGGGAAACTGTAGCCCTTTCTCCTACACCTTGTTCTCCAAACTCCAACACCAATTGGTTGCTGGAAAATAACAGGAGCACAAAATGGACTCCTGAAGAGAACAAACTCTTTGAAAATGCTCTTGCAGTGCATGATAAAGATACTCCAGATCGGTGGCACAAAGTGGCTGAAATGATTCCTGGAAAGACAGTACTTGATGTGATCAAGCAGTACAAAGAACTTGAAATTGATGTTAGCAATATAGAAGCTGGGTTAATCCCTGTTCCTGGTTATAGCACTGCTACTTCACCCTTCACCTTAGATTGGGTGAACAGTCCTGGTTATGATGGGTTCAAAGGAAGTGGAAAGAGATCATCCTCAGCGAGACCTCATGAGCAGGAAAGGAAGAAAGGAGTGCCTTGGACTGAAGAGGAACATAAATTGTTTTTACTGGGTCTGAAGAAATATGGGAAAGGTGATTGGAGAAATATTTCTCGCAATTTTGTGATCTCTAGAACACCAACACAAGTGGCTAGCCATGCTCAGAAGTACTTCATAAGGCAACTTTCAGGAGGCAAAGACAAGAGAAGGGCCAGCATACATGACATAACAACAGTGAATTTGACAGAAACATCCACAACATCTTCAGAAGACACCAACAGATCCACCTCACCACATGTGCTCTCACAGCAGCAGCAGCAGCAGCCAAATTCTACTCCAACTACACCCACAACTCATTTTCAGTGGAGTAATCAGTCAAGCACAGGAATAGCTATGACTTTCAACCCTGCTCATGAAAGAGTCTTCATGTCTCCTTATGGTGCTAACTCCTTTGGGGTTAAAATGGAAGCACGGAATCTGCATAACGAGTCTTCTTACTTGGGACCTCAGACGCAGAACATTGTTTTCCAAATGCAACAGTCCTCACAACACTAG 921 0.4332 MKWETVALSPTPCSPNSNTNWLLENNRSTKWTPEENKLFENALAVHDKDTPDRWHKVAEMIPGKTVLDVIKQYKELEIDVSNIEAGLIPVPGYSTATSPFTLDWVNSPGYDGFKGSGKRSSSARPHEQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVISRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTETSTTSSEDTNRSTSPHVLSQQQQQQPNSTPTTPTTHFQWSNQSSTGIAMTFNPAHERVFMSPYGANSFGVKMEARNLHNESSYLGPQTQNIVFQMQQSSQH 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01965 306 Pfam Myb-like DNA-binding domain 135 180 IPR001005 -
Vian7g01965 306 Pfam Myb-like DNA-binding domain 30 74 IPR001005 -
Vian7g01965 306 CDD SANT 30 76 IPR001005 -
Vian7g01965 306 FunFam transcription factor MYB1R1 134 185 - -
Vian7g01965 306 Gene3D - 23 90 - -
Vian7g01965 306 MobiDBLite consensus disorder prediction 120 135 - -
Vian7g01965 306 FunFam Transcription factor SRM1 23 90 - -
Vian7g01965 306 ProSiteProfiles SANT domain profile. 136 184 IPR017884 -
Vian7g01965 306 Gene3D - 134 184 - -
Vian7g01965 306 MobiDBLite consensus disorder prediction 204 242 - -
Vian7g01965 306 ProSiteProfiles SANT domain profile. 26 81 IPR017884 -
Vian7g01965 306 ProSiteProfiles Myb-like domain profile. 128 180 IPR001005 -
Vian7g01965 306 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 25 254 IPR043363 -
Vian7g01965 306 NCBIfam myb-like DNA-binding domain, SHAQKYF class 131 183 IPR006447 GO:0003677
Vian7g01965 306 CDD SANT 135 180 IPR001005 -
Vian7g01965 306 MobiDBLite consensus disorder prediction 113 135 - -
Vian7g01965 306 SUPERFAMILY Homeodomain-like 27 76 IPR009057 -
Vian7g01965 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 184 IPR017930 -
Vian7g01965 306 SUPERFAMILY Homeodomain-like 129 183 IPR009057 -
Vian7g01965 306 SMART sant 27 79 IPR001005 -
Vian7g01965 306 SMART sant 132 182 IPR001005 -
Vian7g01965 306 ProSiteProfiles Myb-like domain profile. 23 77 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01965 Vian-Chr7 31657478 31658733 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian7g01965 Myb_DNA-binding 2.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01965 - - gmx:778034 519.62