Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01962 ATGGATATTGTATTAAGAGGAGAAAGTCATGGTGAAAATGGCTTTCAAATTTATGGTTGTGATGTTATGAACCATGCTTTGACATCCACAGACACAGATCAATTCCTATGTGGCCACTTCCTTCATCATCAACAACAACAACAGACAAAGAACAATGATAACCTTACACTGTGTCTGGATGATATGCAATGTAAGAACACAAAAGTGGTGGGAAGGAGAAGGAAGAAACAATCTTCTGTGTCTTGGATCAAAGGACAGTGGAATAAGGAAGAGGACAGGAAACTGATGAGGTTGGTGAAACAACATGGTGATAAAAAGTGGGCTGAAATAGCTGAGAAGTTGGAGGGAAGAGTTGGCAAACAATGTCGAGAAAGATGGAACAATCATTTGCGTCCTGATATTAAGAAAGATAGCTGGAGCGAAGAAGAAGAAAGAATACTGGTAGACATGCATAGGAGGCTTGGAAATCGTTGGTGCGAGATGGCGAAATGCCTTCCAGGAAGATCAGAGAATGCCATAAAGAACCACTGGAATGCGACGAAAAGGAGACAGAATTCAAAGAGAAAGCACAAGAAAACAAAGACCTCTAATGGAAAACCTCATTCCTCCATACTCGAAGACTACATCAGAAGCAGCAAGACCATCATCACCACAAACTCTACACCTCTTACTGCCCCAACACCCTCACAGGACAACAATGCACACAACCCTTTCAACCATCTCTTCTATCAACCTTTTCCTAACGAACCACTCTTCATGCAACAAATTTTCACGGAGAATGTCGAAGCCTCTAAGCAGTCTAAGATGTCTCCAACCTCATATTTGGATCACTGGAACATGATGAATGTTGATGATGTTGATGAGAGTGAGGTTGTGTATTCTCTGCAATACCCAGATAATATGCACTTCAATGATAGTTTCTTCCCCAGAGAGACCCATCCCCCAGCTACTTACCTTCCTTCGGATTTTTATGTCTCTCCCTTGTTCAACGTAGCATCTGGGTATGGAAATCAGAATCTCAACATGGATTTTCGGCATCAAGGTGCCTCACAAGTAAAAGGAGAGGAGATCTGGTAG 1077 0.4206 MDIVLRGESHGENGFQIYGCDVMNHALTSTDTDQFLCGHFLHHQQQQQTKNNDNLTLCLDDMQCKNTKVVGRRRKKQSSVSWIKGQWNKEEDRKLMRLVKQHGDKKWAEIAEKLEGRVGKQCRERWNNHLRPDIKKDSWSEEEERILVDMHRRLGNRWCEMAKCLPGRSENAIKNHWNATKRRQNSKRKHKKTKTSNGKPHSSILEDYIRSSKTIITTNSTPLTAPTPSQDNNAHNPFNHLFYQPFPNEPLFMQQIFTENVEASKQSKMSPTSYLDHWNMMNVDDVDESEVVYSLQYPDNMHFNDSFFPRETHPPATYLPSDFYVSPLFNVASGYGNQNLNMDFRHQGASQVKGEEIW 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01962 358 Pfam Myb-like DNA-binding domain 87 144 - -
Vian7g01962 358 MobiDBLite consensus disorder prediction 179 203 - -
Vian7g01962 358 CDD SANT 138 181 IPR001005 -
Vian7g01962 358 Gene3D - 83 135 - -
Vian7g01962 358 PANTHER MYB PROTEIN-RELATED 77 198 - -
Vian7g01962 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 135 185 IPR017930 -
Vian7g01962 358 FunFam Transcriptional activator Myb isoform A 83 136 - -
Vian7g01962 358 CDD SANT 87 130 IPR001005 -
Vian7g01962 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 134 IPR017930 -
Vian7g01962 358 ProSiteProfiles Myb-like domain profile. 84 130 IPR001005 -
Vian7g01962 358 MobiDBLite consensus disorder prediction 180 197 - -
Vian7g01962 358 Gene3D - 137 204 - -
Vian7g01962 358 SUPERFAMILY Homeodomain-like 81 177 IPR009057 -
Vian7g01962 358 SMART sant 135 183 IPR001005 -
Vian7g01962 358 SMART sant 83 132 IPR001005 -
Vian7g01962 358 ProSiteProfiles Myb-like domain profile. 131 181 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01962 Vian-Chr7 31605236 31609205 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01962 61 330 MYB Transcription Factor Family AT5G11050 42.321 8.34e-67 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian7g01962 Myb_DNA-bind_6 8.5e-18 CL0123