Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01942 ATGCACATGAGCACCTACTCGGAGGGCACCACATCAGGACCCATGGAAGATGAAGATTTGGAGAACAACAATGAGAAGACAGCAATGGTGAGAAAGAAGTCAGAAGTAGTTGTGGCGGTGGCAAGTAATAATGGTCGTTCAGAAATGCTTAGGAATTTGATGACCAATTTGCAAGCGGTGTTTCTTGGTACTAAGCTTGCTGTGCTTTTTCCAGCAGTTCCTTTGGCTGTTGTTGCAACCTTTTATGGCTTTGGAAGGCCTTGGATTTTCGCTTTCAGCCTCCTTGGACTGGCTCCTCTAGCTGAACGTGTCAGCTTCCTGACTGAGCAAATTGCATATTATACTGGTCCAACAGTTGGAGGGCTTCTGAATGCAACTTGTGGAAATGCAACTGAGATGATCATAGCATTATTAGCACTTCATCAGAACAAAGTAAATGTTGTGAAGTTGTCCTTGCTTGGTTCCATTCTCTCAAACCTTCTCTTGGTCCTTGGAAGCTCACTCCTCTGTGGTGGTTTAGCCAATCTCAAGAGAGAGCAAAGATATGACAGAAAACAGGCTGATGTAAACTCACTGGTTCTGTTGCTGGGGCTGCTGTGCCATTTGCTGCCATTGCTGTTCAGATACTCCTTAGGTGGGGCCCATCATTCCATAGCCACTAACACTCTTCAGTTGTCCAGAGCAAGCAGTGTTGTTATGCTTCTAGCATACCTTGCTTACATCTTCTTCCAGTTAAAAACTCACAGAAAATTGTTTGATGCACAAGAGGAGGAGGAAGATGAAGAGAAGGCAGTGATAGGATTTTGGAGTGCATTTACGTGGTTGGTGGGTATGACATTGGTCATATCTTTGCTTTCTGAATATGTAGTAGGAACAATCGAGGCTGCTTCAGATTCTTGGGGAATTTCTGTAAGCTTCATTAGCATAATTTTGCTACCAATTGTTGGGAATGCTGCAGAACATGCTGGGTCAATCATATTTGCTTACAAGAACAAGTTGGACATATCTTTGGGGGTGGCTATGGGATCTGCAACTCAAATTTCTATGTTTGTGGTTCCATTAAGTGTGGTTGTTGCATGGATAATGGGTATAAGAATGGATTTAGACTTCAGTCTTCTTGAAACTGGATGTCTTGCTTTTACAATTATAATTACAGCCTTCACTTTACAGGATGGAACTTCCCATTACATGAAAGGAGTGGTTCTTACTCTGTGTTACATTGTCATTGCTGCATGTTTCTTTGTTCTCAAAACTCCTCTAACTGACCAAAATTCTATGGGGAACTGTGGAGCTAAACCATCGTTTGAAGCCATCAACACTTGA 1323 0.4255 MHMSTYSEGTTSGPMEDEDLENNNEKTAMVRKKSEVVVAVASNNGRSEMLRNLMTNLQAVFLGTKLAVLFPAVPLAVVATFYGFGRPWIFAFSLLGLAPLAERVSFLTEQIAYYTGPTVGGLLNATCGNATEMIIALLALHQNKVNVVKLSLLGSILSNLLLVLGSSLLCGGLANLKREQRYDRKQADVNSLVLLLGLLCHLLPLLFRYSLGGAHHSIATNTLQLSRASSVVMLLAYLAYIFFQLKTHRKLFDAQEEEEDEEKAVIGFWSAFTWLVGMTLVISLLSEYVVGTIEAASDSWGISVSFISIILLPIVGNAAEHAGSIIFAYKNKLDISLGVAMGSATQISMFVVPLSVVVAWIMGIRMDLDFSLLETGCLAFTIIITAFTLQDGTSHYMKGVVLTLCYIVIAACFFVLKTPLTDQNSMGNCGAKPSFEAINT 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01942 440 Gene3D - 117 265 IPR044880 -
Vian7g01942 440 Gene3D - 266 415 IPR044880 -
Vian7g01942 440 Pfam Sodium/calcium exchanger protein 271 412 IPR004837 GO:0016020|GO:0055085
Vian7g01942 440 Pfam Sodium/calcium exchanger protein 88 245 IPR004837 GO:0016020|GO:0055085
Vian7g01942 440 MobiDBLite consensus disorder prediction 1 20 - -
Vian7g01942 440 FunFam Vacuolar cation/proton exchanger 117 260 - -
Vian7g01942 440 FunFam Vacuolar cation/proton exchanger 261 415 - -
Vian7g01942 440 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 17 417 IPR004713 GO:0006812|GO:0008324|GO:0016020
Vian7g01942 440 NCBIfam calcium/proton exchanger 71 414 IPR004798 GO:0006816|GO:0015369
Vian7g01942 440 NCBIfam calcium/proton exchanger 52 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01942 Vian-Chr7 31357234 31360882 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01942 23 422 Antiporters AT2G38170 66.993 0.0 530
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01942 K07300 - gmx:100802344 688.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00610 6 22534915 22537780 Vian7g01942 7 31357234 31360882 PCT