Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01936 ATGTGCTGTGTTTCCAAGGGGAAACCTTCTCAAATGGGTCTACTGATGGAGGATGAGTGTGCAAAAGAAGAGATGCATCATAGAATTTCTGCTTTGCTTGAGTTTTCTGCTGCGGATGATCTAATTGGCTTCAAAGACGCGGTTGAAAAGGAGGCTCAGGATGTTGATGGGGTGGGGTTGTGGTATGGAAGGCGTGCTGGCTCAAAGAAAATAAGTTATGAAGAGAGGACTCCTCTCATGGTTGCTGCTACGTTTGGAAGCCTTGATGTGTCTGCTTATATTCTTGGCACGGGTGGTGTTGACGTTAACAGGGCCAGTAGGTCAGATGGGGCTACTGCTCTTCATTGTGCTGTTGCTGGGGGTTCTGCTGCTTCTGTTGAGGTTGTCAAGCTTTTGCTTGATGCATCTGCTGATGTTAGTGCTGTTGATGCTGATGGTAACAGGCCAATTGACTTGATTGTCTCTGTGGCTAATTCTGTCTTCAGTCCAAGGGCCAGGGTGCTACAGGCCCTCCTGGAGGGTACCTGTGATGCTGCTGCTGATCAGACATATTTCTCACTTCCTCAAGTGATTGACCAAATTGAGGAACAAAGGCAAGAAATGACCACATCTCGTGTTTCAAAAGATTATCCCATTGATCTCTCCCTTCCAGACATAAAGAATGGGATATATGGAACTGATGAGTTTAGGATGTATACATTCAAAGTGAAGCCTTGTTCCAGGGCCTATTCTCATGACTGGACCGAATGCCCCTTTGTTCATCCCGGGGAGAACGCTAGGCGACGTGATCCAAGGAAGTACCATTACAGCTGTGTCCCTTGTCCTGAGTTTAGGAAGGGATCTTGCAGCAAAGGGGATGCCTGTGAGTATGCTCATGGTATTTTTGAGTGCTGGCTTCACCCTGCCCAGTACCGGACAAGGCTCTGCAAGGATGAGAGTGGATGCACAAGGAGAGTTTGCTTCTTTGCACACAAGCCAGAGGAGCTTCGCCCCTTGTATGCTTCTACTGGTTCTGCTATTCCTTCTCCAAGGTCCTATTCTGCTGGTGCTTCTGCATTGGAGATGGGTTCAATTAGCCCAATTGCACTTTGTTCTCCATCTGTCTTGATACCAACTTCCTCAACACCACCTTTGACTCCATCTGGAGCATCTTCTCCTATTACTGGTTCCATTTGGTCTCAATCTAATGCTTCGATCCCCACCCTGCTGCTGCCCAAAAGCAGATTGAAGACTGCTTCAACTGCAAGAGACATTGATTTGGATTTTGAACTGCTTGGACTTGAAGCTCATCGGCGTAGACAACAGCTGATGATGGATGACATGTCTGGTCTTTCCTCTCCTAACTGGAAAAATTCCATGCCTAATAGTCCATCTTTTCGTGTTTCTATGAGTGATCACATTGGGGAGTTAAACAGGCTTTCAGGGGTGAAGCCATCAAACCTTGATGATAGCTTTGGATCTCTTGAACAATCAATTTTGTCTAAATTCCATGGAATCTCACTTGATGTTGCAGGACCTCAGTTACAATCTCCAACTGGAATCCAAATGCGTTCAAATATGAACCAGCAGCTGGGGGGCTATTCCTCGGGCCTTTCCACCTCAAACATGGTTGGATCAAGATCCTTCAGGGTTGATCCATCTGCTGAAGGAGCCTCGGTGGCTTTGAATCCAAGAGCTGCTGCTTTTGCTAAGCGTAGCCATAGCTTTATCGAGCGAAGCATGGTGAACCATCATTCTGAGGTTCCTTCTCCAAAGGTCTCTACTTTCACTAACTGGGGCTCACCTGATGGAAAACTTGATTGGACCATAAATGGAGATGAGCTGAATAAGCTGAGGAAATCTGCTTCCTTTGGGTTTCGAAGCATCAACAGTCCTCTTACAAAGGATTCAACCAAAATGCCTGCAAATGTTGATGATGAGCCAGACGTGTCTTGGGTTAACTCACTCGTTAAGGATGCTCCACCAGAATCTGGAGTCGAAGATCAGCGAAAACAATGCCATAATGGAACAGAAGCAATTCCAGCGTGGTTGGAGCAAATGTACTTGGATCAGGAGCAAATGGTGGCATGA 2070 0.4657 MCCVSKGKPSQMGLLMEDECAKEEMHHRISALLEFSAADDLIGFKDAVEKEAQDVDGVGLWYGRRAGSKKISYEERTPLMVAATFGSLDVSAYILGTGGVDVNRASRSDGATALHCAVAGGSAASVEVVKLLLDASADVSAVDADGNRPIDLIVSVANSVFSPRARVLQALLEGTCDAAADQTYFSLPQVIDQIEEQRQEMTTSRVSKDYPIDLSLPDIKNGIYGTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSKGDACEYAHGIFECWLHPAQYRTRLCKDESGCTRRVCFFAHKPEELRPLYASTGSAIPSPRSYSAGASALEMGSISPIALCSPSVLIPTSSTPPLTPSGASSPITGSIWSQSNASIPTLLLPKSRLKTASTARDIDLDFELLGLEAHRRRQQLMMDDMSGLSSPNWKNSMPNSPSFRVSMSDHIGELNRLSGVKPSNLDDSFGSLEQSILSKFHGISLDVAGPQLQSPTGIQMRSNMNQQLGGYSSGLSTSNMVGSRSFRVDPSAEGASVALNPRAAAFAKRSHSFIERSMVNHHSEVPSPKVSTFTNWGSPDGKLDWTINGDELNKLRKSASFGFRSINSPLTKDSTKMPANVDDEPDVSWVNSLVKDAPPESGVEDQRKQCHNGTEAIPAWLEQMYLDQEQMVA 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01936 689 ProSiteProfiles Zinc finger C3H1-type profile. 273 295 IPR000571 GO:0046872
Vian7g01936 689 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 273 293 IPR000571 GO:0046872
Vian7g01936 689 Gene3D - 269 331 - -
Vian7g01936 689 SMART c3hfinal6 268 294 IPR000571 GO:0046872
Vian7g01936 689 SMART c3hfinal6 303 326 IPR000571 GO:0046872
Vian7g01936 689 Pfam Ankyrin repeats (3 copies) 70 142 IPR002110 GO:0005515
Vian7g01936 689 ProSiteProfiles Ankyrin repeat region circular profile. 109 143 - -
Vian7g01936 689 ProSiteProfiles Ankyrin repeat profile. 109 144 IPR002110 GO:0005515
Vian7g01936 689 SMART ANK_2a 109 141 IPR002110 GO:0005515
Vian7g01936 689 SMART ANK_2a 74 104 IPR002110 GO:0005515
Vian7g01936 689 SUPERFAMILY Ankyrin repeat 58 154 IPR036770 -
Vian7g01936 689 Gene3D - 28 179 IPR036770 -
Vian7g01936 689 FunFam Zinc finger CCCH domain-containing protein 66 226 294 - -
Vian7g01936 689 PANTHER UNKEMPT FAMILY MEMBER 34 653 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01936 Vian-Chr7 31070903 31072972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01936 24 684 C2H2 Transcription Factor Family AT5G12850 38.536 3.39e-143 433
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vian7g01936 Ank_2 2.2e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01936 - - gmx:100795085 1154.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g01936 7 31070903 31072972 Vian7g01936 7 31070903 31072972 ECH