Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01924 ATGTCTTGCTCCGTCGCGGTTTCCAATTCGCCGGTCTTCTCTCCCTCCTCTTCTCTCTTCTGCTCTAAGCCTTCCATCATCTCTTCTTCGCCCGAATCCCTTTCCCTCTCCCTCTCCCACCTCAAACCTTCCAACACTAACACGGCCTCCTCTTGTTCTTCTCCTTCTGCTGCGGCTGCTTCCTCCTCTCCTTCTTCTCCTTTTCGCCTTCGCCTTCCCAAGCCTCCCTCCGTCTTCTCTGCCTCCTCCACCTCCCCCAACGGCACCGTTTTGAAGAGGAAGCGACCCGCCAGGCTCGACATACCCGTTTCCTCTCTCACCTTCGGGGTTCCGCCCACGCCCTCCGCTGCGGCGCGTGACGTCGTCGAGGATGAGGAGGATGGCTTTGGGGTCTACTGCAAGAGAGGGAGGAGGGAGTACATGGAGGATCGTTACACCGCTGGGAATAATCTACGCGGTGTAAACAAACTGGCTTTTTTTGGCATATTTGATGGGCACGGAGGTGCCAAGGCTGCTGAATATGCTGCAAATAACTTAGAGAAGAATATTTTAGATGAAGTGATTATGAGAGATGAAGATGATGCTGAGGAGGCAGTGAAGCGTGGGTACCTCAACACAGACTCAGATTTCCTGAAGGAGGAACTCCATGGTGGCTCTTGCTGTGTGACAGCATTGATTAGGAACGGCAACCTTGTTGTGTCCAACGCTGGTGATTGCCGTGCTGTCATTAGCAGAGGGGGTGTTGCTGAAGCCCTAACATCTGATCACAGGCCTTCAAGGGAAGATGAAAGGGACAGAATTGAGAGCCTGGGTGGCTACGTGGATTTATGCCGCGGCATTTGGAGGATCCAAGGATCTCTTGCTGTGTCTAGAGGAATTGGAGATAGACATCTGAAACAATGGGTGACAGCAGAACCTGAGACCAAAGTTCTCAGAATTGAACCTGAACATGACTTGTTAATCTTAGCTTCAGATGGACTATGGGATAAGGTTAGTAATCAGGAAGCAGTAGACATTGCTCGTTCTTTTCTCGTGGGGAGCAACAAATCACAACCATTGCTGGCTTGTAAAAAGCTTGTAGATTTGTCTGTTTCACGAGGCTCCATGGATGATACGAGCGTTATGCTAATCAAATTAGAACACTATGTTTAA 1152 0.5026 MSCSVAVSNSPVFSPSSSLFCSKPSIISSSPESLSLSLSHLKPSNTNTASSCSSPSAAAASSSPSSPFRLRLPKPPSVFSASSTSPNGTVLKRKRPARLDIPVSSLTFGVPPTPSAAARDVVEDEEDGFGVYCKRGRREYMEDRYTAGNNLRGVNKLAFFGIFDGHGGAKAAEYAANNLEKNILDEVIMRDEDDAEEAVKRGYLNTDSDFLKEELHGGSCCVTALIRNGNLVVSNAGDCRAVISRGGVAEALTSDHRPSREDERDRIESLGGYVDLCRGIWRIQGSLAVSRGIGDRHLKQWVTAEPETKVLRIEPEHDLLILASDGLWDKVSNQEAVDIARSFLVGSNKSQPLLACKKLVDLSVSRGSMDDTSVMLIKLEHYV 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01924 383 FunFam probable protein phosphatase 2C 25 121 382 - -
Vian7g01924 383 PANTHER PROTEIN PHOSPHATASE 2C 66 377 IPR015655 GO:0004722|GO:0006470
Vian7g01924 383 SMART PP2C_4 118 377 IPR001932 -
Vian7g01924 383 ProSiteProfiles PPM-type phosphatase domain profile. 128 379 IPR001932 -
Vian7g01924 383 ProSitePatterns PPM-type phosphatase domain signature. 159 167 IPR000222 GO:0043169
Vian7g01924 383 MobiDBLite consensus disorder prediction 36 96 - -
Vian7g01924 383 Pfam Protein phosphatase 2C 129 371 IPR001932 -
Vian7g01924 383 MobiDBLite consensus disorder prediction 36 68 - -
Vian7g01924 383 CDD PP2Cc 128 379 IPR001932 -
Vian7g01924 383 SUPERFAMILY PP2C-like 129 380 IPR036457 -
Vian7g01924 383 Gene3D - 118 382 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01924 Vian-Chr7 30806411 30808311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01924 1 383 PP2C-type Phosphatase Gene Family AT2G30020 63.930 9.58e-168 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01924 K17506 - gmx:100797934 620.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g01924 7 30806411 30808311 Vian7g01924 7 30806411 30808311 ECH
Vian6g00628 6 22903506 22905635 Vian7g01924 7 30806411 30808311 ECH
Vian6g00628 6 22903506 22905635 Vian7g01924 7 30806411 30808311 PCT