Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01919 ATGACTTCTTGGCTGAGAGGCAGGTGCGTCGGGAAGGGCGCGTTTGGAGTTGTCAACGCGGCGGTTTCCAGAGCTGATGGTCGGGTATTCGCGGTGAAGTCCGTGGACCGTGGATTGGGGCACCCTCGTCGGCTGGAGGCGTTGGAGAACGAGATTGAGATTTTGAAACGCGTGGCGTCGCCACACGTGGTCGCTTATCTCGGCGACGACGTCACGTTCGAGCACGGCGGAACGGCGTCGTTCAGGAACCTTCATCTTGAGTACATGCCAGGTGGCACCGTCGCTGATCTGGACCGCGCTGACGTGGACGAGAGTTTGGTGAGGCGCTACGCGTGGTGCCTAGTGAGCGCACTGCGTGACGTCCACGCGCGCGGCTTCGTTCACTGCGACGTCAAGGGGAGGAACGTGCTCCTCTCCGGCAACCGTGCGGCCGCGAAACTCGCCGACTTCGGCTCGGCAGTGGAAGTCGAAGTCCCGCAGGATTTTTTGCCCCGCGGGAGTCCGATGTGGATGGCGCCGGAGGTGGTGCGCCGGGAGCGGCAGGGGCCGGAGTCAGATGTGTGGTCGCTGGGTTGCACGGTGATCGAGATTGTCAACGGGAAACCGCCGTGGGAGGATCACGGTGTGGACACGCTGAGTCGAATCGGTTACTCGGACGAATTGCCGGAGTTTCCAAGCAAACTGTCAGAGCTAGGGAAGGATTTTCTAGAGAAGTGTCTGAGAAGAGAATGGAGAGAGCGGTGGAGCTGCGATCAGCTGCTGCAGCATCCATTTTTGCTTCCCTACGCCGTAGTTGAATCGTCGCCTCGTTGCGTTCTGGACTGGGTTGACTCGGAGTTCGCGGAGTCAGAACATAACGACCTTGAAGAAGAAGGAGGGTGGTTAGAATTTAACCGTAATGAAAATTCAGTTAAAAGTAGAATTCGTAAATTAGCAACAGAATCGAGGGTAAATTGGGAAACACAGGGTTGGGAAGCGGTGAGGGAAGTTGAGCTGAAGGAAGAATCATGGTCATCGAGAACAACAGGTGAAACCGAAGAAGGGGTTAATTGGGAATTTAGCAATGTGGTGGGAGTAGGGAGTTGTGGGGAATGTTGGAACTGTGAAGGGGTAAATCGGGAAATAGAAGAGTTTGGTGAGGAGTGTAAGAGAGGTGGAGTGTGTAATGCAATTGAGAGAGAGAAGAAATTGGGTGGAATGTATAAGAAATTGATTAGGTTGGGTGGTGTGAACTGTGAAGAGGGGAATGATGGTCACAGTTGGACACATATGATGGAAATGATATGGGAGATCTGA 1296 0.544 MTSWLRGRCVGKGAFGVVNAAVSRADGRVFAVKSVDRGLGHPRRLEALENEIEILKRVASPHVVAYLGDDVTFEHGGTASFRNLHLEYMPGGTVADLDRADVDESLVRRYAWCLVSALRDVHARGFVHCDVKGRNVLLSGNRAAAKLADFGSAVEVEVPQDFLPRGSPMWMAPEVVRRERQGPESDVWSLGCTVIEIVNGKPPWEDHGVDTLSRIGYSDELPEFPSKLSELGKDFLEKCLRREWRERWSCDQLLQHPFLLPYAVVESSPRCVLDWVDSEFAESEHNDLEEEGGWLEFNRNENSVKSRIRKLATESRVNWETQGWEAVREVELKEESWSSRTTGETEEGVNWEFSNVVGVGSCGECWNCEGVNREIEEFGEECKRGGVCNAIEREKKLGGMYKKLIRLGGVNCEEGNDGHSWTHMMEMIWEI 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01919 431 SUPERFAMILY Protein kinase-like (PK-like) 4 282 IPR011009 -
Vian7g01919 431 CDD STKc_MAPKKK 3 259 - -
Vian7g01919 431 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 4 343 - -
Vian7g01919 431 FunFam Serine threonine protein kinase putative 2 312 - -
Vian7g01919 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Vian7g01919 431 Gene3D Transferase(Phosphotransferase) domain 1 2 334 - -
Vian7g01919 431 ProSiteProfiles Protein kinase domain profile. 4 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g01919 431 Pfam Protein kinase domain 8 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g01919 431 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vian7g01919 431 SMART serkin_6 4 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01919 Vian-Chr7 30572490 30573916 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01919 4 345 MAP Kinase Kinase Kinase AT1G07150 55.714 9.78e-126 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vian7g01919 Pkinase 4e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01919 - - var:108336699 630.557