Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01915 ATGCCGACTCAATCCGACTCACCCAGTAACTCACTGAGTCAACTCGCTCAGAACGTCTTCTCCGACAACAACAGCAGCATCATGCTCGCAGCCGTTCTTTCCTTGCTCCTAGTCATCCTCTTTGTCCTCCTACTCCACGTGTATGCCAAGTGGTTCTTATCTCAGTCGCAATTACGTTCTCACACTCGCCGGTGGCGAACTCCGGTGACTGTCTCCGACGTTCTGGAACCTTCCCATTTCCACAGTATCAACATAGAAGCTTCACCCACCTGCCCGAAGGGCCTGGATTCAGCGACAGTTTCAGCAATTCCCATGTTTGTGCACAAAACAGAGAAAACAGAGGAATTGGAATGTGTGATCTGTTTGAGCGTTATTGAGGAGGGTGAGATTGGAAGGAGATTGCCAAAGTGTGGCCACGCTTTTCATGTGGAGTGCATTGACATGTGGTTTACTTCACATTCCAATTGTCCCATTTGCAGAGCTCCTATTCTGGGAAGCGATGATTCTGAACCGGGTTCTGATGACGTCTTTGAGATTGTGGTTGTTACTCCTGGTTATGAGATTAGTCATAGTGAAATCGGTGCGATGAGTGGTTCTGTTCCAGAAAATTCTTCTTCTTTGTTGGCTTTCTCTCTGAAGAGATTGCTGAGTAAGGTTTTTCTGTCACCTGACCATGCTGTGTTGTTCAGTCATGATGAAGTAGTCTTCTTGTGGGATGGATCAGAGTTCAGTTCTGCAAATAAGGGTTACTTAGCAACTGAAACACGCATTACGATGACGCTGGTCGCGTTCTTCCTCACCGCCACCAAGCTCGCCGGAGCTCTCTTTACTCTCACCGTTGCCGCCAACGCCTTCTCCTACTCCCGCTTCCGCAAGAACAACCTTCGCCGATTCCGCTCCCCTATCGACGAAACTTCCGACAAAGAGAGCTCGGATTAA 939 0.4867 MPTQSDSPSNSLSQLAQNVFSDNNSSIMLAAVLSLLLVILFVLLLHVYAKWFLSQSQLRSHTRRWRTPVTVSDVLEPSHFHSINIEASPTCPKGLDSATVSAIPMFVHKTEKTEELECVICLSVIEEGEIGRRLPKCGHAFHVECIDMWFTSHSNCPICRAPILGSDDSEPGSDDVFEIVVVTPGYEISHSEIGAMSGSVPENSSSLLAFSLKRLLSKVFLSPDHAVLFSHDEVVFLWDGSEFSSANKGYLATETRITMTLVAFFLTATKLAGALFTLTVAANAFSYSRFRKNNLRRFRSPIDETSDKESSD 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01915 312 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 17 171 - -
Vian7g01915 312 SUPERFAMILY RING/U-box 105 165 - -
Vian7g01915 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 168 IPR013083 -
Vian7g01915 312 SMART FANCL_C_2 114 167 - -
Vian7g01915 312 FunFam RING-H2 finger protein ATL1 82 165 - -
Vian7g01915 312 CDD RING-H2_EL5-like 117 160 - -
Vian7g01915 312 ProSiteProfiles Zinc finger RING-type profile. 118 160 IPR001841 -
Vian7g01915 312 Pfam Ring finger domain 117 160 IPR001841 -
Vian7g01915 312 SMART ring_2 118 159 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01915 Vian-Chr7 30436944 30439163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01915 27 161 Rapid Response to Elicitors AT3G16720 40.580 4.31e-26 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01915 - - gmx:100777829 344.739
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g01915 7 30436944 30439163 Vian7g01915 7 30436944 30439163 ECH
Vian6g00633 6 22965050 22965817 Vian7g01915 7 30436944 30439163 PCT