Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01895 ATGAGTGTTAATTGTTCACCCTGTGCTTCCTGCAAGCTCCTGAGACGGCGTTGCTCCCAGAATTGCATCTTTGCTCCTTATTTTCCTCCCAATGATCTTCACAAGTTTGCCATGGTGCACAAGGTCTTTGGATGCAAGAATCTTACAAAAATGCTACAGGATGTTCCTGTTGAGAAAAGAGAAGATATAGTGAAGAGTTTAGTTTATGAGGCAAATGCAAGAGTGAGAAATCCTGTGTATGGTTGTGTTGGACTAATATCTAACCTAGAAATTCAAGTTTCTGAGTTACAAACGCAGCTTGCAGTAGCTCAGGCGGAGATTCTTACAATGAAAATGCAGCAAGAATTTACCTTCAACAATGGTCGTATATCACCATGA 378 0.4074 MSVNCSPCASCKLLRRRCSQNCIFAPYFPPNDLHKFAMVHKVFGCKNLTKMLQDVPVEKREDIVKSLVYEANARVRNPVYGCVGLISNLEIQVSELQTQLAVAQAEILTMKMQQEFTFNNGRISP 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01895 125 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Vian7g01895 125 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Vian7g01895 125 Coils Coil 86 113 - -
Vian7g01895 125 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01895 Vian-Chr7 30071256 30072927 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01895 6 120 AS2 family AT2G30130 71.304 3.13e-58 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vian7g01895 LOB 1.6e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01895 - - sly:101243798 176.407