Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01879 ATGGCGACGGATGCTAGGGCGAAGTTCCAGAACGCAGATTTCCGCCCCGATTTTCACGCGGACCTAAAGGTGTCAACTCACGACGGTCTCCACTTCTGGCAGTTCATGATAGCCGGATCTGTTGCCGGCTGTGTCGAGCACATGGCGATGTTTCCCGTTGACACCGTTAAGACCCGCATGCAGGCCTTGGGTTCTTGCCCGGTCAAAACCGGCACTGTCCGTCAGGCCCTGAAGTCCATTCTCCAATCTGAGGGCCCGTCCGCCCTTTACCGTGGAATAGGCGCAATGGGCCTTGGCGCTGGTCCGGCCCATGCCGTCTATTTCTCTGTCTATGAGACCTGCAAGAAGCGTTTATCAGAGGGGAACCCTAACAACGCTGCCGCACATGCGGCCTCTGGTGTCTGCGCCACCGTGGCCAGCGATGCCGTGTTTACGCCGATGGACATGGTGAAGCAGAGACTGCAGCTGGGGAATAGTGGGTACAAGGGGGTTTGGGATTGCGTGAGAAGGGTTATGAGCGAGGAAGGGTTTCGGGCGTTCTACGCCTCTTATAGGACTACTGTGTTGATGAACGCCCCTTTCACAGCTGTGCATTTCACGACCTATGAGGCCGCAAAACGTGGTCTCATGGAGGTCTCGCCCGAGAGTGTTGATGATGAACGGTTAATTGTGCATGCCACTGCCGGTGCTGTGGCCGGAGCCTTGGCTGCCGCTATTACGACGCCTCTGGATGTTGTGAAGACTCAATTGCAGTGTCAGGGTGTCTGTGGTTGCGATAGGTTCAAAAGTGGATCAATTCAGGATGTTATTAAAACAATAGTGAAAAAAGATGGGTATAGAGGGCTCATGCGAGGATGGATTCCAAGGATGCTCTTTCATGCTCCGGCAGCTGCTATTTGCTGGTCTACATATGAAGCTGGAAAGTCCTTTTTCCAAGATTTCAATCAGCAGAAAGACGTTGGCACTGTTACCTAA 975 0.5364 MATDARAKFQNADFRPDFHADLKVSTHDGLHFWQFMIAGSVAGCVEHMAMFPVDTVKTRMQALGSCPVKTGTVRQALKSILQSEGPSALYRGIGAMGLGAGPAHAVYFSVYETCKKRLSEGNPNNAAAHAASGVCATVASDAVFTPMDMVKQRLQLGNSGYKGVWDCVRRVMSEEGFRAFYASYRTTVLMNAPFTAVHFTTYEAAKRGLMEVSPESVDDERLIVHATAGAVAGALAAAITTPLDVVKTQLQCQGVCGCDRFKSGSIQDVIKTIVKKDGYRGLMRGWIPRMLFHAPAAAICWSTYEAGKSFFQDFNQQKDVGTVT 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01879 324 Pfam Mitochondrial carrier protein 125 211 IPR018108 -
Vian7g01879 324 Pfam Mitochondrial carrier protein 221 313 IPR018108 -
Vian7g01879 324 Pfam Mitochondrial carrier protein 30 120 IPR018108 -
Vian7g01879 324 Gene3D Mitochondrial carrier domain 124 324 IPR023395 -
Vian7g01879 324 FunFam Mitochondrial RNA-splicing protein MRS3 11 158 - -
Vian7g01879 324 FunFam Mitochondrial RNA-splicing protein MRS3 159 322 - -
Vian7g01879 324 PANTHER MITOFERRIN-1-RELATED 26 314 - -
Vian7g01879 324 SUPERFAMILY Mitochondrial carrier 28 305 IPR023395 -
Vian7g01879 324 ProSiteProfiles Solute carrier (Solcar) repeat profile. 220 310 IPR018108 -
Vian7g01879 324 ProSiteProfiles Solute carrier (Solcar) repeat profile. 30 117 IPR018108 -
Vian7g01879 324 ProSiteProfiles Solute carrier (Solcar) repeat profile. 124 208 IPR018108 -
Vian7g01879 324 PRINTS Mitochondrial carrier protein signature 139 157 IPR002067 GO:0055085
Vian7g01879 324 PRINTS Mitochondrial carrier protein signature 48 62 IPR002067 GO:0055085
Vian7g01879 324 PRINTS Mitochondrial carrier protein signature 229 251 IPR002067 GO:0055085
Vian7g01879 324 PRINTS Mitochondrial carrier protein signature 35 48 IPR002067 GO:0055085
Vian7g01879 324 PRINTS Mitochondrial carrier protein signature 181 199 IPR002067 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01879 Vian-Chr7 29698077 29700844 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01879 131 321 Chloroplast and Mitochondria Gene Families AT2G30160 28.351 3.61e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01879 K15113 - gmx:100802640 617.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g01879 7 29698077 29700844 Vian7g01879 7 29698077 29700844 ECH